genome.fa.s19171.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019171.1 Corchorus olitorius cultivar O-4 contig19204, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  105369

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--26	2	13.0	2	100	0	52	0	50	0	50	1.00
8636--8684	25	2.0	25	100	0	98	34	20	32	12	1.90
9548--9596	25	2.0	25	95	0	89	32	20	34	12	1.90
8335--10767	925	2.7	905	92	3	4079	25	11	27	35	1.90
10469--10517	25	2.0	25	95	0	89	34	18	32	14	1.91
13071--13151	40	2.0	40	92	0	135	44	12	17	25	1.84
13414--13473	28	2.2	27	87	3	84	50	13	8	28	1.70
13408--13479	28	2.4	31	75	15	78	54	11	6	27	1.61
16325--16399	35	2.1	35	87	4	107	37	13	16	33	1.87
16852--16891	21	1.9	21	84	0	53	35	5	2	57	1.34
17679--17736	28	2.1	28	93	0	98	31	10	20	37	1.86
17707--17778	36	2.0	37	88	2	110	33	12	16	37	1.86
18165--18221	20	2.9	20	78	17	57	50	5	3	40	1.42
19964--19996	11	2.9	12	86	13	52	63	15	3	18	1.43
21380--21424	17	2.4	20	82	14	60	71	0	8	20	1.12
24502--24542	14	2.9	14	82	13	57	80	17	0	2	0.82
24500--24543	18	2.6	17	86	10	63	81	15	0	2	0.78
24679--24708	15	2.0	15	93	0	51	43	23	13	20	1.86
24990--25016	11	2.5	11	100	0	54	48	0	25	25	1.52
25254--25337	20	3.9	21	73	15	73	22	19	14	44	1.86
35101--35309	98	2.1	98	90	0	328	31	17	23	27	1.97
35910--35953	18	2.4	18	80	0	52	47	9	6	36	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41873--42182	44	7.5	41	75	14	232	36	14	16	32	1.89
41873--42185	39	7.7	38	78	13	222	36	15	15	32	1.89
41873--42186	118	2.6	120	80	10	361	36	15	15	32	1.89
42989--43022	2	17.0	2	100	0	68	50	0	0	50	1.00
44552--44619	30	2.3	30	87	5	93	16	10	23	50	1.75
46018--46281	62	4.3	62	91	1	404	23	23	13	39	1.90
46322--46403	23	3.4	23	73	15	85	18	25	18	37	1.93
46314--46525	58	3.9	50	78	16	203	23	22	16	38	1.92
46363--46567	58	3.5	58	93	0	356	24	20	15	39	1.92
47304--47340	3	12.3	3	100	0	74	67	0	0	32	0.91
48011--48042	6	5.7	6	92	7	50	0	0	12	87	0.54
59626--59655	14	2.1	14	100	0	60	33	20	13	33	1.91
60833--60873	21	2.0	21	85	9	57	19	2	9	68	1.29
66101--66202	27	3.7	27	85	10	136	15	14	27	42	1.86
74365--74397	15	2.1	16	88	5	50	66	6	3	24	1.28
75069--75113	19	2.4	19	88	3	65	60	8	17	13	1.58
77814--78116	152	2.0	151	90	0	471	15	26	42	16	1.87
78386--78421	19	1.9	18	88	5	54	41	8	22	27	1.82
83503--83583	33	2.5	33	85	0	99	24	6	23	45	1.75
83530--83598	33	2.1	33	86	5	95	23	5	23	47	1.72
85424--85662	21	11.4	21	88	0	329	28	20	25	25	1.99
86596--86631	19	1.9	18	88	5	54	41	5	22	30	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93080--93129	21	2.4	21	89	0	73	12	24	48	16	1.79
98086--98121	18	1.9	18	88	5	54	36	22	2	38	1.69
101883--101927	19	2.2	20	88	11	65	35	13	31	20	1.91
103994--104029	19	1.9	18	88	5	54	41	5	22	30	1.76

Tables:   1

The End!