Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019172.1 Corchorus olitorius cultivar O-4 contig19205, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2224
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.27


Found at i:48 original size:27 final size:27

Alignment explanation


    Indices: 16--92  Score: 109
    Period size: 27  Copynumber: 2.9  Consensus size: 27

          6 GGTTTAAGGT

                  *                    
         16 CATTCAGGGGCATTTTAGTCATTTGCA
          1 CATTCAAGGGCATTTTAGTCATTTGCA

            **    *                    
         43 TGTTCATGGGCATTTTAGTCATTTGCA
          1 CATTCAAGGGCATTTTAGTCATTTGCA

                            *      
         70 CATTCAAGGGCATTTTGGTCATT
          1 CATTCAAGGGCATTTTAGTCATT

         93 CGAACCCTTA


Statistics
Matches: 43,  Mismatches: 7, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  27   43  1.00

ACGTcount: A:0.21, C:0.17, G:0.22, T:0.40


Consensus pattern (27 bp):   
CATTCAAGGGCATTTTAGTCATTTGCA
Done.