Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019180.1 Corchorus olitorius cultivar O-4 contig19213, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2298
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32


Found at i:537 original size:46 final size:46

Alignment explanation


    Indices: 474--582  Score: 209
    Period size: 46  Copynumber: 2.4  Consensus size: 46

        464 TGAGTAATTA

                                                          
        474 TCACACTGGATCAAGAGGTAATTGTTTAAAGGATAAAAAGGATAAT
          1 TCACACTGGATCAAGAGGTAATTGTTTAAAGGATAAAAAGGATAAT

                                                  *       
        520 TCACACTGGATCAAGAGGTAATTGTTTAAAGGATAAAAGGGATAAT
          1 TCACACTGGATCAAGAGGTAATTGTTTAAAGGATAAAAAGGATAAT

                             
        566 TCACACTGGATCAAGAG
          1 TCACACTGGATCAAGAG

        583 CTTTATCTAA


Statistics
Matches: 62,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  46   62  1.00

ACGTcount: A:0.41, C:0.11, G:0.23, T:0.25


Consensus pattern (46 bp):   
TCACACTGGATCAAGAGGTAATTGTTTAAAGGATAAAAAGGATAAT
Done.