Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019183.1 Corchorus olitorius cultivar O-4 contig19216, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27019

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8911--8941
14
2.1
15
94
5
55
51
0
0
48
1.00
12440--12513
24
3.2
23
70
16
64
47
0
9
43
1.36
12704--12852
78
1.9
78
95
0
271
47
7
10
34
1.66
13624--13673
2
25.5
2
87
4
66
54
2
0
44
1.11
14054--14256
69
2.7
72
85
8
250
30
18
21
29
1.97
14111--14311
81
2.5
81
84
5
252
33
16
21
28
1.95
16230--16302
12
5.9
12
88
4
110
35
12
24
27
1.91
16228--16302
25
3.0
25
98
1
143
36
12
24
28
1.91
16230--16302
37
1.9
38
91
2
121
35
12
24
27
1.91
17291--17316
10
2.6
10
100
0
52
30
7
23
38
1.83
17424--17466
20
2.1
21
83
12
54
37
11
20
30
1.89
18145--18194
24
2.1
24
96
0
91
38
12
20
30
1.88
19105--19185
40
2.0
40
85
4
110
38
9
12
39
1.76
19169--19295
22
5.8
22
78
0
119
39
11
13
35
1.81
19169--19323
44
3.5
43
79
3
148
41
11
14
31
1.82
19177--19317
66
2.1
66
83
5
169
43
12
12
32
1.79
19525--19669
22
6.6
22
82
1
130
33
11
14
40
1.81
19525--19669
44
3.3
44
79
3
157
33
11
14
40
1.81
21030--21069
17
2.5
16
84
11
55
50
2
0
47
1.14

Tables:   1

The End!