Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019184.1 Corchorus olitorius cultivar O-4 contig19217, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21941

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1151--1175
11
2.3
11
100
0
50
0
20
32
48
1.50
1993--2043
18
2.8
18
81
18
61
74
3
7
13
1.18
1993--2040
19
2.5
20
87
9
66
75
4
6
14
1.16
1992--2045
19
2.7
19
78
13
56
74
3
9
12
1.20
7233--7260
14
2.0
14
100
0
56
71
0
14
14
1.15
8179--8675
153
3.4
141
89
5
703
29
20
15
34
1.93
8789--9446
40
16.7
39
80
6
548
31
20
8
39
1.83
8789--9591
80
10.3
80
77
7
599
30
20
9
39
1.83
8781--9591
40
20.9
37
79
8
475
30
20
9
40
1.83
9307--9586
111
2.5
112
91
1
436
26
21
10
41
1.85
9564--9618
27
2.1
26
96
3
101
21
21
12
43
1.86
10860--10922
31
2.1
30
90
3
99
33
44
7
14
1.74
13167--13219
19
2.8
20
86
11
76
75
3
7
13
1.15
13171--13217
17
2.7
17
84
15
69
76
4
6
12
1.12
13166--13228
21
3.1
21
73
15
53
69
4
7
17
1.30
13171--13217
18
2.7
17
87
12
69
76
4
6
12
1.12
17767--18294
132
4.0
132
82
3
616
33
17
14
35
1.90
19856--19935
29
2.9
27
81
9
99
23
11
23
41
1.87

Tables:   1

The End!