Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019187.1 Corchorus olitorius cultivar O-4 contig19220, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70763

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
731--778
23
2.1
23
100
0
96
18
25
35
20
1.95
715--761
17
2.8
17
93
0
76
14
25
36
23
1.93
3716--3760
22
2.0
22
91
0
72
35
13
24
26
1.92
3832--3911
25
3.2
25
96
0
142
30
12
35
22
1.91
9881--9944
31
2.1
31
96
0
119
29
10
39
20
1.87
9856--9910
25
2.2
25
93
0
92
29
12
38
20
1.89
11568--11615
16
3.2
15
75
18
55
6
37
0
56
1.25
12708--12788
40
2.0
40
92
0
135
30
18
8
41
1.80
13779--13919
31
4.5
31
78
0
129
34
24
22
19
1.97
26407--26433
7
3.9
7
100
0
54
59
14
11
14
1.62
31019--31064
16
3.1
16
75
15
53
21
6
6
65
1.39
44278--44308
15
2.0
16
93
6
55
70
22
6
0
1.09
46225--46260
2
18.0
2
88
11
56
47
0
2
50
1.15
46225--46260
11
3.0
12
88
12
56
47
0
2
50
1.15
46232--46269
17
2.2
17
90
0
58
47
0
2
50
1.15
48864--48892
6
4.8
6
100
0
58
17
17
48
17
1.82
57355--57402
15
3.2
15
69
0
51
18
14
50
16
1.79
66494--69043
328
7.8
328
80
6
2752
35
17
14
32
1.89
66512--69043
979
2.6
981
92
2
4206
35
17
14
32
1.90

Tables:   1

The End!