Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019189.1 Corchorus olitorius cultivar O-4 contig19222, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75695

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1481--1552
32
2.2
32
80
0
81
47
18
15
19
1.83
2973--3043
29
2.4
29
79
4
81
22
15
15
46
1.83
3223--3292
29
2.4
29
73
7
70
45
15
15
22
1.84
11453--11515
33
1.9
33
93
0
108
46
14
17
22
1.84
16802--16854
24
2.2
24
83
6
63
11
35
1
50
1.49
16868--16932
30
2.2
30
82
0
76
1
47
7
43
1.41
16880--16923
21
2.1
21
86
0
61
0
54
4
40
1.21
16883--16932
24
2.1
24
88
0
73
0
50
6
44
1.26
17466--17735
135
2.0
131
88
4
398
30
25
13
30
1.94
25934--25967
16
2.1
16
88
0
50
55
0
32
11
1.36
28846--28872
12
2.2
12
100
0
54
14
7
0
77
0.97
29873--29930
28
2.1
28
100
0
116
46
20
6
25
1.75
35631--35698
34
2.0
34
97
0
127
23
19
32
25
1.97
41110--41226
58
2.0
58
93
0
198
46
12
24
16
1.82
41251--43032
666
2.7
668
91
3
2882
30
13
18
36
1.90
41251--43133
332
5.6
332
89
4
2774
30
14
18
36
1.91
44331--44368
14
2.8
14
88
11
53
26
0
0
73
0.83
44544--44614
32
2.2
32
84
0
88
47
16
12
22
1.80
46108--46139
2
16.0
2
100
0
64
50
0
0
50
1.00
59426--59459
13
2.6
13
90
0
50
11
38
11
38
1.79
74922--75072
45
3.4
45
98
0
284
10
25
22
41
1.85

Tables:   1

The End!