Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019192.1 Corchorus olitorius cultivar O-4 contig19225, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97213

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1084--1191
39
2.8
39
98
0
207
21
11
24
43
1.84
9063--9105
20
2.2
20
91
0
68
16
23
16
44
1.86
9551--9592
21
2.0
21
100
0
84
33
9
52
4
1.55
9546--9588
21
2.1
20
87
8
68
37
9
48
4
1.56
9597--9702
51
2.1
51
98
0
185
39
10
42
7
1.67
9602--9683
27
3.1
27
65
16
73
36
13
41
8
1.75
11955--11989
17
2.1
17
100
0
70
42
11
5
40
1.65
15592--17824
663
3.4
653
80
6
2350
33
15
15
35
1.89
15591--17824
332
6.7
330
80
6
2274
33
15
15
35
1.89
21556--21609
24
2.2
24
96
0
99
25
25
24
24
2.00
26134--26336
100
2.0
100
94
0
352
41
22
10
24
1.86
26774--26812
20
2.0
20
85
10
53
58
7
2
30
1.39
27430--27498
30
2.3
30
92
5
113
28
13
14
43
1.83
29059--29092
16
2.1
17
88
5
52
44
0
2
52
1.16
33160--33196
19
1.9
19
88
0
56
29
16
13
40
1.86
33958--33986
12
2.4
12
100
0
58
0
24
0
75
0.80
39499--39532
17
2.1
16
88
5
50
47
14
11
26
1.79
52098--52229
65
2.0
65
92
0
219
28
21
9
40
1.85
56845--56875
15
2.1
15
100
0
62
51
6
6
35
1.53
69719--69744
11
2.4
11
100
0
52
46
11
15
26
1.80
79491--79601
56
2.0
56
92
3
188
39
1
22
36
1.65
83864--83930
21
3.2
21
66
16
57
50
13
4
31
1.61
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
83851--83931
42
1.9
42
92
0
135
46
14
6
32
1.69
84240--84267
2
14.0
2
100
0
56
50
0
0
50
1.00
85805--86495
352
2.0
352
85
1
956
32
16
18
31
1.94
88923--88965
20
2.2
20
95
0
77
30
25
4
39
1.76
91316--91345
2
15.0
2
100
0
60
50
0
0
50
1.00
92614--92659
22
2.1
22
84
8
58
56
6
6
30
1.50
93202--93236
2
17.5
2
100
0
70
48
0
0
51
1.00
95593--95617
6
4.2
6
100
0
50
16
16
36
32
1.90

Tables:   1

The End!