Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019194.1 Corchorus olitorius cultivar O-4 contig19227, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84836

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5744--5807
28
2.2
29
83
2
76
39
18
10
31
1.86
10448--10895
224
2.0
224
99
0
887
35
18
16
29
1.93
11421--11577
84
1.9
85
89
1
244
40
13
16
29
1.87
13104--13260
83
1.9
84
89
1
244
36
15
16
31
1.91
13460--13490
15
2.1
15
100
0
62
0
35
0
64
0.94
25687--25735
24
2.0
24
88
0
71
20
14
26
38
1.91
26326--26352
3
9.0
3
100
0
54
33
0
0
66
0.92
33217--33264
18
2.7
18
100
0
96
8
6
16
68
1.35
34683--34708
7
3.7
7
100
0
52
11
11
46
30
1.76
34921--34976
27
2.1
27
93
0
94
7
30
10
51
1.63
35277--35508
115
2.0
115
88
6
342
27
13
18
40
1.88
36850--36923
31
2.4
29
82
10
94
22
22
8
45
1.78
37166--37584
204
2.1
204
79
6
447
37
12
25
24
1.90
50611--50693
26
3.0
26
77
13
103
22
18
14
44
1.86
53330--53392
29
2.2
29
88
5
92
52
11
12
23
1.71
56366--56396
7
4.4
7
100
0
62
45
12
12
29
1.80
66450--66479
5
5.8
5
92
7
51
0
20
0
80
0.72
78536--80529
323
6.2
321
87
3
2456
34
14
16
34
1.89
78536--80594
644
3.2
640
84
5
2491
34
14
16
34
1.89
80602--81766
322
3.6
320
84
3
1398
32
14
17
35
1.90
80923--84824
920
4.2
916
81
8
4735
33
13
17
35
1.89

Tables:   1

The End!