Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019196.1 Corchorus olitorius cultivar O-4 contig19229, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82811

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8503--8557
2
27.0
2
88
3
83
49
0
5
45
1.25
13097--13121
11
2.3
11
100
0
50
52
0
36
12
1.39
17976--18206
123
1.9
123
98
0
444
46
12
13
28
1.79
20342--20371
2
15.0
2
100
0
60
50
0
0
50
1.00
33761--33847
44
2.0
44
97
0
165
33
17
6
42
1.76
54770--54906
68
2.0
67
91
1
220
43
16
16
23
1.87
62242--62278
19
1.9
19
100
0
74
27
27
8
37
1.84
62460--62497
2
19.0
2
100
0
76
50
0
0
50
1.00
63602--63682
32
2.5
32
100
0
162
43
2
11
43
1.53
77171--77207
18
2.1
18
89
0
56
16
5
59
18
1.55
80442--80499
19
2.9
19
87
5
80
29
22
12
36
1.90
80581--80616
18
2.0
18
88
0
54
25
0
22
52
1.47
82780--82811
1
32.0
1
100
0
64
0
0
0
100
0.00

Tables:   1

The End!