Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019197.1 Corchorus olitorius cultivar O-4 contig19230, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2283
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34


Found at i:2051 original size:28 final size:27

Alignment explanation


    Indices: 2009--2063  Score: 76
    Period size: 28  Copynumber: 2.0  Consensus size: 27

       1999 TTTTTATTTG

                            *          
       2009 AGTTTGTTTTTGAGTCGGTTT-GAGTC
          1 AGTTTGTTTTTGAGTCAGTTTCGAGTC

                                         
       2035 AGTTTGTTTTTTCGAGTCAGTTTCGAGTC
          1 AGTTTG-TTTTT-GAGTCAGTTTCGAGTC

       2064 TAGTCTCAGT


Statistics
Matches: 25,  Mismatches: 1, Indels: 3
        0.86            0.03        0.10

Matches are distributed among these distances:
  26    6  0.24
  27    5  0.20
  28    9  0.36
  29    5  0.20

ACGTcount: A:0.13, C:0.11, G:0.27, T:0.49


Consensus pattern (27 bp):   
AGTTTGTTTTTGAGTCAGTTTCGAGTC
Done.