Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019198.1 Corchorus olitorius cultivar O-4 contig19231, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69139

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
646--700
28
2.0
27
86
10
76
12
10
27
49
1.74
15273--15312
4
10.8
4
89
5
50
80
0
17
2
0.83
17692--17746
3
18.3
3
100
0
110
67
0
32
0
0.91
41850--41881
13
2.5
13
100
0
64
59
6
34
0
1.23
41874--41910
15
2.2
17
86
13
51
72
10
16
0
1.10
41898--41943
21
2.2
21
88
7
67
76
8
13
2
1.11
41898--41943
10
4.4
11
81
10
60
76
8
13
2
1.11
42947--43007
30
2.0
30
93
0
104
26
22
3
47
1.67
48801--49003
83
2.4
83
100
0
406
39
15
17
27
1.89
49387--49440
2
29.5
2
77
17
55
53
0
1
44
1.11
49397--49445
22
2.1
22
88
7
71
59
0
0
40
0.98
49395--49447
5
10.4
5
81
6
54
58
0
0
41
0.98
49620--49686
21
3.1
22
75
14
61
53
5
0
40
1.25
53019--53063
18
2.4
20
82
14
60
46
4
0
48
1.22
64384--64431
23
2.1
23
100
0
96
35
14
25
25
1.94
68397--68584
101
1.9
101
93
0
322
36
21
13
28
1.92

Tables:   1

The End!