Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001920.1 Corchorus olitorius cultivar O-4 contig01920, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 709

Length: 1182
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.31


Found at i:644 original size:23 final size:24

Alignment explanation


    Indices: 603--654  Score: 61
    Period size: 26  Copynumber: 2.1  Consensus size: 24

        593 TTAATTAATT

                                  *   
        603 AAATATTTAATAATTTTTTTGTCAAA
          1 AAATATTTAATAA-TTTTTT-TAAAA

                               *    
        629 AAATATTTAAT-ATTTTTTAAAAA
          1 AAATATTTAATAATTTTTTTAAAA

               
        652 AAA
          1 AAA

        655 AAAAACTTTG


Statistics
Matches: 24,  Mismatches: 2, Indels: 3
        0.83            0.07        0.10

Matches are distributed among these distances:
  23    6  0.25
  24    6  0.25
  25    1  0.04
  26   11  0.46

ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46


Consensus pattern (24 bp):   
AAATATTTAATAATTTTTTTAAAA
Done.