Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019203.1 Corchorus olitorius cultivar O-4 contig19236, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  98209

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5827--5864
11
3.5
11
85
10
51
57
2
0
39
1.12
10842--10879
2
19.0
2
88
0
58
47
2
2
47
1.30
37964--38149
66
2.9
64
79
12
186
28
15
23
32
1.95
38090--38285
105
1.9
105
91
2
322
30
16
21
31
1.95
38198--38331
61
2.2
61
98
0
259
29
17
21
31
1.96
38096--38450
166
2.1
166
94
1
624
27
16
21
33
1.95
38231--38627
105
3.8
104
88
5
468
27
16
21
34
1.95
38509--38605
49
2.0
47
86
9
135
29
19
19
30
1.97
39521--39652
61
2.1
63
86
6
180
28
17
21
32
1.96
43902--44067
67
2.5
67
96
0
305
27
18
24
28
1.98
45817--45964
37
4.0
37
97
0
278
27
16
18
38
1.91
58665--58692
14
2.0
14
100
0
56
42
28
7
21
1.79
79645--79669
13
1.9
13
100
0
50
8
16
0
76
1.02
83216--83246
15
2.1
15
93
0
53
41
19
16
22
1.89
89042--89090
21
2.3
21
100
0
98
30
28
14
26
1.95
96442--96681
120
2.0
121
95
0
437
29
17
14
39
1.88

Tables:   1

The End!