Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019207.1 Corchorus olitorius cultivar O-4 contig19240, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  105281

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
704--762
30
2.0
30
100
0
118
40
22
13
23
1.89
8601--8626
11
2.4
11
100
0
52
50
7
19
23
1.73
9337--9374
18
2.2
17
86
13
51
55
0
36
7
1.29
14639--14671
16
2.1
17
88
11
52
63
18
0
18
1.31
45395--45432
15
2.6
16
84
16
55
7
5
5
81
0.98
47278--47315
18
2.1
18
90
0
58
47
0
5
47
1.24
47838--47893
29
2.0
28
89
3
85
39
7
8
44
1.63
51513--51628
60
1.9
60
81
6
137
37
15
17
30
1.91
66815--66887
29
2.5
31
82
11
98
20
6
12
60
1.55
71927--72638
236
3.0
235
88
2
1025
25
19
20
33
1.97
76972--77198
115
2.0
115
89
3
350
25
21
17
35
1.95
83851--83879
1
29.0
1
100
0
58
100
0
0
0
0.00
89045--89083
17
2.3
17
86
8
53
25
15
20
38
1.92
103275--103301
4
6.8
4
100
0
54
25
0
0
74
0.83
103519--103750
117
2.0
114
88
2
338
18
22
13
44
1.85

Tables:   1

The End!