Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001921.1 Corchorus olitorius cultivar O-4 contig01921, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 725

Length: 1209
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:1113 original size:20 final size:22

Alignment explanation


    Indices: 1077--1120  Score: 65
    Period size: 21  Copynumber: 2.1  Consensus size: 22

       1067 GTTCTTTCCA

                  *               
       1077 TTTTTCTTTGTTCTTAA-CCTT
          1 TTTTTCATTGTTCTTAATCCTT

                                  
       1098 TTTTTCATTGTT-TTAATCCTT
          1 TTTTTCATTGTTCTTAATCCTT

              
       1119 TT
          1 TT

       1121 GAACCCAACA


Statistics
Matches: 21,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  20    4  0.19
  21   17  0.81

ACGTcount: A:0.11, C:0.16, G:0.05, T:0.68


Consensus pattern (22 bp):   
TTTTTCATTGTTCTTAATCCTT
Done.