Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01019210.1 Corchorus olitorius cultivar O-4 contig19243, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 151367
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.33
Found at i:46614 original size:6 final size:6
Alignment explanation
Indices: 46603--46638 Score: 63
Period size: 6 Copynumber: 6.0 Consensus size: 6
46593 TGTAACGACT
*
46603 CTCAAC CTCAAC CTCAAC CTCAAC CACAAC CTCAAC
1 CTCAAC CTCAAC CTCAAC CTCAAC CTCAAC CTCAAC
46639 ACTAGTACAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.36, C:0.50, G:0.00, T:0.14
Consensus pattern (6 bp):
CTCAAC
Found at i:47180 original size:35 final size:35
Alignment explanation
Indices: 47140--47206 Score: 134
Period size: 35 Copynumber: 1.9 Consensus size: 35
47130 GCGAAGTAGC
47140 ACTCTATGAGAAATAAATTCATTGATAAGTAGTAA
1 ACTCTATGAGAAATAAATTCATTGATAAGTAGTAA
47175 ACTCTATGAGAAATAAATTCATTGATAAGTAG
1 ACTCTATGAGAAATAAATTCATTGATAAGTAG
47207 AAAATGGAAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.45, C:0.09, G:0.15, T:0.31
Consensus pattern (35 bp):
ACTCTATGAGAAATAAATTCATTGATAAGTAGTAA
Found at i:49563 original size:5 final size:5
Alignment explanation
Indices: 49553--49578 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
49543 TACACTGTAC
49553 AGATT AGATT AGATT AGATT AGATT A
1 AGATT AGATT AGATT AGATT AGATT A
49579 TGTACTGTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.42, C:0.00, G:0.19, T:0.38
Consensus pattern (5 bp):
AGATT
Found at i:58912 original size:12 final size:12
Alignment explanation
Indices: 58895--58962 Score: 85
Period size: 12 Copynumber: 6.2 Consensus size: 12
58885 ATAAAGATTT
*
58895 TTTTTTCTTCTC
1 TTTTTTCATCTC
58907 TTTTTTCATCTC
1 TTTTTTCATCTC
58919 TTTTTT-A--TC
1 TTTTTTCATCTC
58928 TTTTTTCATCTC
1 TTTTTTCATCTC
58940 TTTTTT-A--TC
1 TTTTTTCATCTC
58949 TTTTTTCATCTC
1 TTTTTTCATCTC
58961 TT
1 TT
58963 AAGTAGGGTT
Statistics
Matches: 49, Mismatches: 1, Indels: 12
0.79 0.02 0.19
Matches are distributed among these distances:
9 16 0.33
10 2 0.04
11 2 0.04
12 29 0.59
ACGTcount: A:0.07, C:0.21, G:0.00, T:0.72
Consensus pattern (12 bp):
TTTTTTCATCTC
Found at i:58931 original size:9 final size:10
Alignment explanation
Indices: 58905--58959 Score: 74
Period size: 10 Copynumber: 5.3 Consensus size: 10
58895 TTTTTTCTTC
58905 TCTTTTTTCA
1 TCTTTTTTCA
*
58915 TCTCTTTTTTA
1 TCT-TTTTTCA
58926 TCTTTTTTCA
1 TCTTTTTTCA
*
58936 TCTCTTTTTTA
1 TCT-TTTTTCA
58947 TCTTTTTTCA
1 TCTTTTTTCA
58957 TCT
1 TCT
58960 CTTAAGTAGG
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
10 21 0.54
11 18 0.46
ACGTcount: A:0.09, C:0.20, G:0.00, T:0.71
Consensus pattern (10 bp):
TCTTTTTTCA
Found at i:58931 original size:21 final size:21
Alignment explanation
Indices: 58905--58962 Score: 116
Period size: 21 Copynumber: 2.8 Consensus size: 21
58895 TTTTTTCTTC
58905 TCTTTTTTCATCTCTTTTTTA
1 TCTTTTTTCATCTCTTTTTTA
58926 TCTTTTTTCATCTCTTTTTTA
1 TCTTTTTTCATCTCTTTTTTA
58947 TCTTTTTTCATCTCTT
1 TCTTTTTTCATCTCTT
58963 AAGTAGGGTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.09, C:0.21, G:0.00, T:0.71
Consensus pattern (21 bp):
TCTTTTTTCATCTCTTTTTTA
Found at i:59239 original size:33 final size:33
Alignment explanation
Indices: 59202--59271 Score: 140
Period size: 33 Copynumber: 2.1 Consensus size: 33
59192 GATTTAACTA
59202 TATTACAGTTAATTACAGTTAATGCTCTGAATT
1 TATTACAGTTAATTACAGTTAATGCTCTGAATT
59235 TATTACAGTTAATTACAGTTAATGCTCTGAATT
1 TATTACAGTTAATTACAGTTAATGCTCTGAATT
59268 TATT
1 TATT
59272 GATCAAACAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.33, C:0.11, G:0.11, T:0.44
Consensus pattern (33 bp):
TATTACAGTTAATTACAGTTAATGCTCTGAATT
Found at i:61630 original size:81 final size:81
Alignment explanation
Indices: 61495--61664 Score: 304
Period size: 81 Copynumber: 2.1 Consensus size: 81
61485 TCTTTTGGAG
* *
61495 ATGGGTTTGTCATCTTCATCATCATTTTCTTCCTTCTTGGGCTTGGTCGCTTTGGCGCGTGACGC
1 ATGGGTTTGTCATCTTCATCATCACTTTCTTCCTTCTTGGGCTTGGTCGCTTTGGCGCGGGACGC
*
61560 AGATGAAGAACCTTTA
66 AGATGAAGAACCGTTA
*
61576 ATGGGTTTTTCATCTTCATCATCACTTTCTTCCTTCTTGGGCTTGGTCGCTTTGGCGCGGGACGC
1 ATGGGTTTGTCATCTTCATCATCACTTTCTTCCTTCTTGGGCTTGGTCGCTTTGGCGCGGGACGC
61641 AGATGAAGAACCGTTA
66 AGATGAAGAACCGTTA
61657 ATGGGTTT
1 ATGGGTTT
61665 CTTAAAATCT
Statistics
Matches: 85, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
81 85 1.00
ACGTcount: A:0.16, C:0.22, G:0.25, T:0.38
Consensus pattern (81 bp):
ATGGGTTTGTCATCTTCATCATCACTTTCTTCCTTCTTGGGCTTGGTCGCTTTGGCGCGGGACGC
AGATGAAGAACCGTTA
Found at i:84447 original size:3 final size:3
Alignment explanation
Indices: 84439--84472 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
84429 CCGCATTCAT
84439 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
84473 GTTTTTGTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:92993 original size:9 final size:9
Alignment explanation
Indices: 92981--93015 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
92971 GAAGAAAAAG
92981 ATTATCTAT
1 ATTATCTAT
92990 ATTATCTAT
1 ATTATCTAT
92999 A-T-TCTAT
1 ATTATCTAT
93006 ATTATCTAT
1 ATTATCTAT
93015 A
1 A
93016 CTAATTATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
7 6 0.25
8 2 0.08
9 16 0.67
ACGTcount: A:0.34, C:0.11, G:0.00, T:0.54
Consensus pattern (9 bp):
ATTATCTAT
Found at i:93006 original size:16 final size:16
Alignment explanation
Indices: 92985--93015 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
92975 AAAAAGATTA
92985 TCTATATTATCTATAT
1 TCTATATTATCTATAT
93001 TCTATATTATCTATA
1 TCTATATTATCTATA
93016 CTAATTATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.13, G:0.00, T:0.55
Consensus pattern (16 bp):
TCTATATTATCTATAT
Found at i:103256 original size:13 final size:13
Alignment explanation
Indices: 103237--103280 Score: 54
Period size: 13 Copynumber: 3.4 Consensus size: 13
103227 GATTTCAAAT
103237 ATGTATA-CAATA
1 ATGTATATCAATA
*
103249 ACTGTATATTAATA
1 A-TGTATATCAATA
*
103263 ATGTATATTAATA
1 ATGTATATCAATA
103276 ATGTA
1 ATGTA
103281 CACGACAGCG
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
12 1 0.03
13 23 0.79
14 5 0.17
ACGTcount: A:0.45, C:0.05, G:0.09, T:0.41
Consensus pattern (13 bp):
ATGTATATCAATA
Found at i:114670 original size:6 final size:6
Alignment explanation
Indices: 114655--114684 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
114645 GCAGCTAACC
*
114655 AACCAA AACCAG AACCAG AACCAG AACCAG
1 AACCAG AACCAG AACCAG AACCAG AACCAG
114685 CCGTTATCGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.53, C:0.33, G:0.13, T:0.00
Consensus pattern (6 bp):
AACCAG
Found at i:117963 original size:24 final size:25
Alignment explanation
Indices: 117907--117956 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
117897 AAACGGACTC
117907 TAACTTTATTTGAGTGTATATCTTT
1 TAACTTTATTTGAGTGTATATCTTT
*
117932 TAACTTTATTTGAGTTTATATCTTT
1 TAACTTTATTTGAGTGTATATCTTT
117957 AATTTTACAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.24, C:0.08, G:0.10, T:0.58
Consensus pattern (25 bp):
TAACTTTATTTGAGTGTATATCTTT
Found at i:118030 original size:25 final size:26
Alignment explanation
Indices: 117971--118032 Score: 83
Period size: 26 Copynumber: 2.4 Consensus size: 26
117961 TTACACAAGG
117971 AATGCATGATTTATTGGACAGAAGAA
1 AATGCATGATTTATTGGACAGAAGAA
* *
117997 AATGCATGATCTT-TTGGCCCGAAG-A
1 AATGCATGAT-TTATTGGACAGAAGAA
118022 AATGCATGATT
1 AATGCATGATT
118033 ACTAATAAGT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
24 1 0.03
25 11 0.33
26 19 0.58
27 2 0.06
ACGTcount: A:0.35, C:0.13, G:0.23, T:0.29
Consensus pattern (26 bp):
AATGCATGATTTATTGGACAGAAGAA
Found at i:133882 original size:37 final size:37
Alignment explanation
Indices: 133832--133909 Score: 156
Period size: 37 Copynumber: 2.1 Consensus size: 37
133822 ACAAATTTTA
133832 TATTCATGAATTTAAGTTTTCAACCTCTTATGCATTC
1 TATTCATGAATTTAAGTTTTCAACCTCTTATGCATTC
133869 TATTCATGAATTTAAGTTTTCAACCTCTTATGCATTC
1 TATTCATGAATTTAAGTTTTCAACCTCTTATGCATTC
133906 TATT
1 TATT
133910 GCTGTATTTT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.27, C:0.18, G:0.08, T:0.47
Consensus pattern (37 bp):
TATTCATGAATTTAAGTTTTCAACCTCTTATGCATTC
Found at i:135963 original size:33 final size:33
Alignment explanation
Indices: 135921--135990 Score: 140
Period size: 33 Copynumber: 2.1 Consensus size: 33
135911 GTACCAAAGG
135921 AAAATACGAAATGGGTTCATCTCCTTTTGGATC
1 AAAATACGAAATGGGTTCATCTCCTTTTGGATC
135954 AAAATACGAAATGGGTTCATCTCCTTTTGGATC
1 AAAATACGAAATGGGTTCATCTCCTTTTGGATC
135987 AAAA
1 AAAA
135991 CAAATGGCGA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.31
Consensus pattern (33 bp):
AAAATACGAAATGGGTTCATCTCCTTTTGGATC
Found at i:148531 original size:326 final size:319
Alignment explanation
Indices: 147592--148844 Score: 1373
Period size: 319 Copynumber: 3.9 Consensus size: 319
147582 TGGTAAAAAT
* * * * * *
147592 GACCAAAAAGATTTTTTCTCAATTTTTGGCAAAAACACTCATAAAAATATATATAATTCAACGCC
1 GACCCAAAA-ATTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAA-ATATATAATTCAACGCC
* * *
147657 AAAAAAATTGGA-GGACTTTTCACGCTTTTAATATCGTTTTTCATATTTTTTTTTCTGAATTAAT
64 AAAAAGATT-GACGGGCTTTTCACGCTTATAATATCGTTTTTC--ATTTTTTTTTC-GAATTAAT
* * * * * * *
147721 TTCTAATTCAATCGAAACAAGATTCTGATGCACGTAAAAACAAATCTTTAAATCCAATGTGGCCT
125 TTCTAATTAAATCGAAACAAGATTCAGATGCTCGAAAAAACAAATCCTTATATCCAATATGG-CT
* * * * ** * * *
147786 -AGATTTGATTAC-ACT-AATAAAGACATTTCAAAGAGTCTCAGCACCAAAAACCATGCAAAACA
189 GAGATTTGGTT-CGA-TGAATATAGATATTTCAAGGAGTCTTTGCGCCAAAAATCATGCAAAA-T
* * * * *
147848 GAGCCGTGACCCCGGAAGGCGTTTTTAGTCAAAATCCGTGATAGTTAGTACACGATTTTGGCTGA
251 GAGCCGGGACCCCGAAACGCGTTTTTAGCCAAAAACCGTGATAGTTAGTACACGATTTTGGCT-A
*
147913 AAACT
315 AAACC
* * * * * * *
147918 GACCC-GAAAGTTTCTCACAATTTTTTGCCACAATACTTAGAAAAATTATATAATTCAACTCCAA
1 GACCCAAAAATTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCAA
* * * *
147982 AAAGATTAACGGGCTTTTCACG-TTCTAATATCGTTTTTTCATTTTTCTCT-GAATTAATTAT-T
66 AAAGATTGACGGGCTTTTCACGCTTATAATATCG-TTTTTCATTTTTTTTTCGAATTAATT-TCT
* * * * * * *
148044 AATTAAATCAAAATAAGATTCAGAGGCTCGAAAAAAAAAAAGTCCTCATATCCAATGTGGCTGAC
129 AATTAAATCGAAACAAGATTCAGATGCTCG-AAAAAACAAA-TCCTTATATCCAATATGGCTGAG
* ** * * *
148109 ATTTGGTTTGATGAATATAGATAAATCAAGGAGTTTTTGCGCAAAAAATTATGCAAAATTGAGCC
192 ATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGCGCCAAAAATCATGCAAAA-TGAGCC
*
148174 GAGG-CTCCGAAACGCGTTTTTAGCCAAAAACCGTGATAGTTAGTACACGATTTTGGCTAAAGAC
256 G-GGACCCCGAAACGCGTTTTTAGCCAAAAACCGTGATAGTTAGTACACGATTTTGGCTAAA-AC
148238 C
319 C
*
148239 AACCCAAAAATTTTTATCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCA
1 GACCCAAAAATTTTT-TCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCA
* * * *
148304 AAAAGATTGATGGGCTTTTCACGCTTATGATATCGTTTTTTCCTTCTTTTTTTTTCGAATTTATT
65 AAAAGATTGACGGGCTTTTCACGCTTATAATATCG-TTTTT-C--ATTTTTTTTTCGAATTAATT
* *
148369 TCTAATTAAATCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCTTATATCCAATATGGCTGG
126 TCTAATTAAATCGAAACAAGATTCAGATGCTCGAAAAAACAAATCCTTATATCCAATATGGCTGA
*
148434 GATTTGGTTCGATGAA-AGTAGATATTTCAAGGAGTCTTTGTGCCAAAAATCATGCAAAATGGAG
191 GATTTGGTTCGATGAATA-TAGATATTTCAAGGAGTCTTTGCGCCAAAAATCATGCAAAAT-GAG
* * *
148498 CCGGGACTCCGAAACGCGTTTTTAGCCAAAAACCGTAATAGTTAGTACACGATTTCGGCTAAAAA
254 CCGGGACCCCGAAACGCGTTTTTAGCCAAAAACCGTGATAGTTAGTACACGATTTTGGCT-AAAA
*
148563 CG
318 CC
* *
148565 GACCCGAAAAGTTTTTT-TCAAATTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCA
1 GACCC-AAAAATTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCA
* * *
148629 AAAAGATTGACGGGGTTTTCACGCTTGTAATATCGTTTTTCCA---TTTTTCCGAATTAATTTCT
65 AAAAGATTGACGGGCTTTTCACGCTTATAATATCGTTTTT-CATTTTTTTTTCGAATTAATTTCT
* * * * *
148691 AATTAAGTCGAAACAAGATTGAGATGCTCGAAAAAACAAATCCATATATTCAATATGACTGAGAT
129 AATTAAATCGAAACAAGATTCAGATGCTCGAAAAAACAAATCCTTATATCCAATATGGCTGAGAT
* * * * *
148756 TTGGTTCGATGAATATATATATTTGAAGGAGCCTTTACGCCAAAAATCTTGCAAAACTGAGCCGG
194 TTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTGCGCCAAAAATCATGCAAAA-TGAGCCGG
* * *
148821 GTCCCCGGAACACGTTTTTAGCCA
258 GACCCCGAAACGCGTTTTTAGCCA
148845 TAAGCCAAGA
Statistics
Matches: 788, Mismatches: 114, Indels: 57
0.82 0.12 0.06
Matches are distributed among these distances:
319 186 0.24
320 17 0.02
321 126 0.16
322 18 0.02
323 106 0.13
324 50 0.06
325 84 0.11
326 137 0.17
327 29 0.04
328 35 0.04
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.32
Consensus pattern (319 bp):
GACCCAAAAATTTTTTCTCAATTTTTTGCCACAATACTCAGAAAAAATATATAATTCAACGCCAA
AAAGATTGACGGGCTTTTCACGCTTATAATATCGTTTTTCATTTTTTTTTCGAATTAATTTCTAA
TTAAATCGAAACAAGATTCAGATGCTCGAAAAAACAAATCCTTATATCCAATATGGCTGAGATTT
GGTTCGATGAATATAGATATTTCAAGGAGTCTTTGCGCCAAAAATCATGCAAAATGAGCCGGGAC
CCCGAAACGCGTTTTTAGCCAAAAACCGTGATAGTTAGTACACGATTTTGGCTAAAACC
Found at i:148992 original size:647 final size:637
Alignment explanation
Indices: 147628--149186 Score: 1486
Period size: 647 Copynumber: 2.4 Consensus size: 637
147618 TGGCAAAAAC
* * * * * *
147628 ACTCATAAAAATATATATAATTCAACGCCAAAAAAATTGGAGGACTTTTCACGCTTTTAATATCG
1 ACTCA-AAAAAAAAATATAATTCAACACCAAAAAGATTGAAGGGCTTTTCACGC--TTAA-ATCG
** * * ** *
147693 TTTTTCATATTTTTTTTTCTGAATTAATTTCTAATTCAATCGAAACAAGATTCTGATGCACGTAA
62 TTTTTTTTCTTTTTTTTTC-GAATTAATTTCTAATTAAATCGAAACAAGATTAAGATGCTCGTAA
* * * * *
147758 AAACAAATCTTTAAATCCAATGTGGCCT-AGATTTGATTAC-ACT-AATAAAGACATTTCAAAGA
126 AAACAAATCCTT-AATCCAATGTGG-CTGAGATTTGGTT-CGA-TGAA-ATAGATATTTCAAGGA
** ** * * * * * * *
147820 GTCTCAGCACCAAAAACCATGCAAAACAGAGCCGTGACCCCGGAAGGCGTTTTTAGTCAAAATCC
186 GTCTTTGTGCCAAAAATCATGCAAAA-TGAGCCGGGA-CCCGAAACGCGTTTTTAGCCAAAAACC
* * * *
147885 GTGATAGTTAGTACACGATTTTGGCTGAAAACTGACCCGAAAGTTTCTCACAATTTTTTGCCACA
249 GTGATAGTTAGTACACGATTTCGGCTAAAAACGGACCCGAAAGTTTCTCACAAATTTTTGCCACA
* * *
147950 ATACTTAGAAAAATTATATAATTCAACTCCAAAAAGATTAACGGGCTTTTCACGTTCTAATATCG
314 ATACTCAGAAAAAATATATAATTCAACGCCAAAAAGATTAACGGGCTTTTCACGTTCTAATATCG
* *
148015 TTTTTTCATTTTTCTCTGAATTAATTATTAATTAAATCAAAATAAGATTCAGAGGCTCGAAAAAA
379 TTTTTCCATTTTTCTCTGAATTAATTATTAATTAAATCAAAACAAGATTCAGAGGCTCGAAAAAA
* * * **
148080 AAAAAGTCCTCATATCCAATGTGGCTGACATTTGGTTTGATGAATATAGATAAATCAAGGAGTTT
444 AAAAAGTCCTCATATCCAATATGACTGACATTTGGTTCGATGAATATAGATAAATCAAGGAGCCT
* * * * **
148145 TTGCGCAAAAAATTATGCAAAATTGAGCCGAGGCTCCGAAACGCGTTTTTAGCCAAAAACCGTGA
509 TTACGCAAAAAATTATGCAAAACTGAGCCGAGGCCCCGAAACACGTTTTTAGCCAAAAACCAAGA
* * * ** * *
148210 TAGTTAGTACACGATTTTGGCTAAAGACCAACCCAAAAATTTTTATCTCAATTTTTTGCCACAAT
574 TAG-TAGTAAACGATTTCGGATAAAGAAAAACCCAAAAATTTTTACCTCAATTCTTTGCCACAAT
* * * *
148275 ACTCAGAAAAAATATATAATTCAACGCCAAAAAGATTGATGGGCTTTTCACGCTTATGATATCGT
1 ACTCAAAAAAAAAATATAATTCAACACCAAAAAGATTGAAGGGCTTTTCACGCTTA--A-ATCGT
* * *
148340 TTTTTCCTTCTTTTTTTTTCGAATTTATTTCTAATTAAATCGAAACAAGATTGAGATGCTCGAAA
63 TTTTT--TTCTTTTTTTTTCGAATTAATTTCTAATTAAATCGAAACAAGATTAAGATGCTCGTAA
* *
148405 AAACAAATCCTTATATCCAATATGGCTGGGATTTGGTTCGATGAAAGTAGATATTTCAAGGAGTC
126 AAACAAATCCTTA-ATCCAATGTGGCTGAGATTTGGTTCGATGAAA-TAGATATTTCAAGGAGTC
*
148470 TTTGTGCCAAAAATCATGCAAAATGGAGCCGGGACTCCGAAACGCGTTTTTAGCCAAAAACCGTA
189 TTTGTGCCAAAAATCATGCAAAAT-GAGCCGGGAC-CCGAAACGCGTTTTTAGCCAAAAACCGTG
* **
148535 ATAGTTAGTACACGATTTCGGCTAAAAACGGACCCGAAAAGTTTTTTTCAAATTTTTGCCACAAT
252 ATAGTTAGTACACGATTTCGGCTAAAAACGGACCCG-AAAGTTTCTCACAAATTTTTGCCACAAT
* * *
148600 ACTCAGAAAAAATATATAATTCAACGCCAAAAAGATTGACGGGGTTTTCACGCTTGTAATATCGT
316 ACTCAGAAAAAATATATAATTCAACGCCAAAAAGATTAACGGGCTTTTCACG-TTCTAATATCGT
* * * *
148665 TTTTCCATTTTTC-C-GAATTAATT-TCTAATTAAGTCGAAACAAGATTGAGATGCTCG-AAAAA
380 TTTTCCATTTTTCTCTGAATTAATTAT-TAATTAAATCAAAACAAGATTCAGAGGCTCGAAAAAA
* * * * ** *
148726 ACAAA-TCCAT-ATATTCAATATGACTGAGATTTGGTTCGATGAATATATATATTTGAAGGAGCC
444 AAAAAGTCC-TCATATCCAATATGACTGACATTTGGTTCGATGAATATAGATAAATCAAGGAGCC
* * * *
148789 TTTACGCCAAAAATCT-TGCAAAACTGAGCCG-GGTCCCCGGAACACGTTTTTAGCCATAAGCCA
508 TTTACGCAAAAAAT-TATGCAAAACTGAGCCGAGG-CCCCGAAACACGTTTTTAGCCAAAAACCA
148852 AGAT-G-AGTAAACGATTTCGGATAAAATTTTGTAAAAACTTATCCGAAAAATTTTT-CCTCAAT
571 AGATAGTAGTAAACGATTTCGGAT-AAA----G-AAAAAC----CC-AAAAATTTTTACCTCAAT
*
148914 TCTTTGCCTCAAT
625 TCTTTGCCACAAT
* * *
148927 AC-CAAAAAAAAAAAATAATAATTTAACACCAAAAATATTGAAGGG-TTTT-TC-C-T---TC--
1 ACTC--AAAAAAAAAAT-ATAATTCAACACCAAAAAGATTGAAGGGCTTTTCACGCTTAAATCGT
* *
148982 -----TT-TTTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAACATTAAGATGCTCGTAAAA
63 TTTTTTTCTTTTTTTTTCGAATTAATTTCTAATTAAATCGAAACAAGATTAAGATGCTCGTAAAA
* * * * *
149041 ACAAATCGTTAAACGAATGTGGCTGTGATTTGGTTCGATG-AAT--ATA--TCAAGGAGTCTTTA
128 ACAAATCCTTAATCCAATGTGGCTGAGATTTGGTTCGATGAAATAGATATTTCAAGGAGTCTTTG
* * * * * * *
149101 TGCTAAAAATTATTCTAAAATGAGCTAGGG-CCCCAGAATGCGTTTTTAGCCATAAACCGTGATA
193 TGCCAAAAATCATGC-AAAATGAGC-CGGGACCCGA-AACGCGTTTTTAGCCAAAAACCGTGATA
*
149165 ---AGTAAACGATTTCGGCTAAAAA
255 GTTAGTACACGATTTCGGCTAAAAA
149187 TTGAGACGAA
Statistics
Matches: 768, Mismatches: 110, Indels: 91
0.79 0.11 0.09
Matches are distributed among these distances:
624 21 0.03
626 3 0.00
627 55 0.07
628 8 0.01
629 3 0.00
631 1 0.00
632 2 0.00
633 25 0.03
634 62 0.08
635 2 0.00
642 14 0.02
643 3 0.00
644 8 0.01
645 97 0.13
646 72 0.09
647 210 0.27
648 87 0.11
649 23 0.03
650 1 0.00
651 2 0.00
652 22 0.03
653 23 0.03
654 24 0.03
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.32
Consensus pattern (637 bp):
ACTCAAAAAAAAAATATAATTCAACACCAAAAAGATTGAAGGGCTTTTCACGCTTAAATCGTTTT
TTTTCTTTTTTTTTCGAATTAATTTCTAATTAAATCGAAACAAGATTAAGATGCTCGTAAAAACA
AATCCTTAATCCAATGTGGCTGAGATTTGGTTCGATGAAATAGATATTTCAAGGAGTCTTTGTGC
CAAAAATCATGCAAAATGAGCCGGGACCCGAAACGCGTTTTTAGCCAAAAACCGTGATAGTTAGT
ACACGATTTCGGCTAAAAACGGACCCGAAAGTTTCTCACAAATTTTTGCCACAATACTCAGAAAA
AATATATAATTCAACGCCAAAAAGATTAACGGGCTTTTCACGTTCTAATATCGTTTTTCCATTTT
TCTCTGAATTAATTATTAATTAAATCAAAACAAGATTCAGAGGCTCGAAAAAAAAAAAGTCCTCA
TATCCAATATGACTGACATTTGGTTCGATGAATATAGATAAATCAAGGAGCCTTTACGCAAAAAA
TTATGCAAAACTGAGCCGAGGCCCCGAAACACGTTTTTAGCCAAAAACCAAGATAGTAGTAAACG
ATTTCGGATAAAGAAAAACCCAAAAATTTTTACCTCAATTCTTTGCCACAAT
Found at i:150085 original size:331 final size:326
Alignment explanation
Indices: 149365--151361 Score: 1939
Period size: 331 Copynumber: 6.1 Consensus size: 326
149355 ATAGCCAAAC
* ** * * ** *
149365 GTACACGATTTCGGCTAAAAATTGAGACGAAATTTTTTTTTCTCAATTTTTTGTGACAATAGTCA
1 GTACACGATTTCGGCTAAAAACTGACCCG-AA--GTTTTTTCTGAATTTTTTGCCACAATACTCA
* * * * *
149430 TAAAAAATATATAATTTCACGC-CAAAAAAATTGAAGGAT-TTTTCACACTTCTAATATCATTTT
63 GAAAAAATATATAA-TTCAAGCACAAAAAGATTGACGG-TCTTTTCACGCTT-TAATATCATTTT
* * * *
149493 TCCATTTTTTT--GAATTAATTTCTAATTAAAACGAAACAAGATTCAGATACTCGTAAAAATAAA
125 TCAATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAA
* * * * *
149556 TCGTTAAATCGAATTTGGCTG-G---GA-TTTGGTTCA-ATGAATATAGATATTTCAAGGAGTCT
190 TCCTTAAATCTAATGTGGCAGAGCCTGAGATTGGTT-AGATGAATATAGATATTTCAAGGAGTCT
*** * * * * * * *
149615 TTAAACC-AAAATCATGCAAAACTGAGCCGGGG-TCCCGGAACGTGGTTTT-AGCAAAAAACCGT
254 TTCTGCCAAAAATCATGCAAAACTGAGTCGGGGCCCCCGAAACGCGTTTTTAAGCCAAAAACCAT
149677 GATGGTTA
319 GATGGTTA
* ** * * * *
149685 CTACTGGATTTCAGCGAAACTTTTGCAAAAACTGACCCGAAAAATTTTTCCTCAAATTTTTTACC
1 GTACACGATTTC-G-G---C---T--AAAAACTGACCCG--AAGTTTTTTCT-GAATTTTTTGCC
* * * * * ** * *
149750 ACAATAGTCAGAAAAAAATACACAATTCAATGCAAAAAAAAATTGA-AATATTTTCTCGCTTTAA
53 ACAATACTCAG-AAAAAATATATAATTCAA-GCACAAAAAGATTGACGGTCTTTTCACGCTTT-A
* * * *
149814 ATATTATTTTTCTATTTTTTTCCGAATCT-ATTTCTAATTAAATCGAAACAATATTCAGATGCTT
115 ATATCATTTTTCAATTTTTTTCCGAAT-TAATTTCTAATTAAATCGAAACAAGATTCAGATGCTC
** *
149878 GTAAAAACAAATATTTAAATCTAATGTGTCAGAGAGCCTGAGATTGGTTAGATGAATATAGATAT
179 GTAAAAACAAATCCTTAAATCTAATGTGGC--AGAGCCTGAGATTGGTTAGATGAATATAGATAT
* * *
149943 TTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCCGAAACACCTTTTTAA
242 TTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAACTGAGTCGGGGCCCCCGAAACGCGTTTTTAA
* *
150008 CCCAAAAACCATAATGGTTA
307 GCCAAAAACCATGATGGTTA
* * *
150028 GTACATGATTTTCAGCTAAAAACTGACCCG-ATTTTTATTCTGAATTTTTTGCCACAATACTCAG
1 GTACACGA-TTTCGGCTAAAAACTGACCCGAAGTTTT-TTCTGAATTTTTTGCCACAATACTCAG
* * *
150092 AAAAAATATATAATTCAA-CACCAAAAATATTGATGGTCTTTTCACGCTTTTAATATCATTATTC
64 AAAAAATATATAATTCAAGCA-CAAAAAGATTGACGGTCTTTTCACGC-TTTAATATCATT-TTT
*
150156 CAATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAATCAAAT
126 CAATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAAT
* * * * *
150221 CCTTATATCCAATGTGGCTG-G-C--A-TTTGGTTTGATGAATATAGATATTTCAAGGAGTCTTT
191 CCTTAAATCTAATGTGGCAGAGCCTGAGATTGGTTAGATGAATATAGATATTTCAAGGAGTCTTT
* * * * * * *
150281 GC-GCCAAAAATCATGCAAAATTGAGTCGGGG-CTCGGGAACGCATTTTT-AGCGAAAAACCGTG
256 -CTGCCAAAAATCATGCAAAACTGAGTCGGGGCCCCCGAAACGCGTTTTTAAGCCAAAAACCATG
150343 ATGGTTA
320 ATGGTTA
* * *
150350 GTACACGATTTCGGCTAAAAACTGATCGGAAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAG
1 GTACACGATTTCGGCTAAAAACTGACCCG--AAGTTTTTTCTGAATTTTTTGCCACAATACTCAG
* *
150415 AAAAAATATATAATTCAACGC-CAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTC
64 AAAAAATATATAATTCAA-GCACAAAAAGATTGACGGTCTTTTCACGCTT-TAATATCATTTTTC
* * * * * *
150479 CATTTTTCTCTGAATTAATTTTTAATTAAATTGAAACAAGATTTAGATGCTCGTAAAAACAAATC
127 AATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATC
* * * *
150544 TTTAAATCTAATGTGACTGAGAGCCTGAGATTGGTTATATGAATATAGATATTTCAAGAAGTCTT
192 CTTAAATCTAATGTGGC--AGAGCCTGAGATTGGTTAGATGAATATAGATATTTCAAGGAGTCTT
* * * * ** * *
150609 TCTACCAAAAATCATGCAAAACTAAGCCGGGTCCCTTGAAAAGCGTTTTTAGGCCAAAAACCATG
255 TCTGCCAAAAATCATGCAAAACTGAGTCGGGGCCCCCGAAACGCGTTTTTAAGCCAAAAACCATG
150674 ATGGTTA
320 ATGGTTA
* ** *
150681 GTACACGATTTTCGGCTAAAATCTGACCCGATTTTTTTTTTCAGAATTTTTTGCCACAATACTCA
1 GTACACGA-TTTCGGCTAAAAACTGACCCGA--AGTTTTTTCTGAATTTTTTGCCACAATACTCA
* *
150746 AAAAAAATATATAATTCAA-CACCAAAAAGATTGATGGTCTTTTCACGCTTTTAATATCATTTTT
63 GAAAAAATATATAATTCAAGCA-CAAAAAGATTGACGGTCTTTTCACGC-TTTAATATCATTTTT
*
150810 CCAATTTTTTTCCGAATTAATTTCTAATTAAATCAAAACAAGATTCAGATGCTCG-AAAAATCAA
126 -CAATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAA-CAA
* * * * * * *
150874 ATCCTTATATCCAATGTGGCTGA--C--A-TTTGGTTTGATGAATATAGATATTTCAAGAATTCT
189 ATCCTTAAATCTAATGTGGCAGAGCCTGAGATTGGTTAGATGAATATAGATATTTCAAGGAGTCT
* * * * * * * *
150934 TTCCGCCAAAAATCATGCAAAATTGAGTCGGGG-CTCGGGAATGCGTTTTTAAGGCAAAAACCGT
254 TTCTGCCAAAAATCATGCAAAACTGAGTCGGGGCCCCCGAAACGCGTTTTTAAGCCAAAAACCAT
150998 GATGGTTA
319 GATGGTTA
* * *
151006 GTACATGATTTCGGCTAAAAACTGA-TCGAAAAAGTTTTTTCTTAATTTTTTGCCACAATACTCA
1 GTACACGATTTCGGCTAAAAACTGACCCG---AAGTTTTTTCTGAATTTTTTGCCACAATACTCA
* * *
151070 G-AAAAATATATAATTCAACGGA-AAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTT
63 GAAAAAATATATAATTCAA-GCACAAAAAGATTGACGGTCTTTTCACGCTT-TAATATCATTTTT
* * * ** *
151133 CCA-TTTTTCCCGAATTAATTTTTAATTAAATTAAAACAAGATTCAGATGCTAGTAAGAAAAACA
126 CAATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGT---AAAAACA
** * *
151197 AATCCAGAAATCTAATGTGGCTCAGAGCCTGAGATTAGTTAGATGAATATAGATATTTTAAGGAG
188 AATCCTTAAATCTAATGTGG--CAGAGCCTGAGATTGGTTAGATGAATATAGATATTTCAAGGAG
*
151262 TCTTTCTGCCAAAAATCATGCAAAACTGAGTCGGGGCTCCCGAAACGCGTTTTT-AGCCAAAAAA
251 TCTTTCTGCCAAAAATCATGCAAAACTGAGTCGGGGCCCCCGAAACGCGTTTTTAAGCC--AAAA
151326 ACCATGATGGTTA
314 ACCATGATGGTTA
151339 GTACACGATTTCGGCTAAAAACT
1 GTACACGATTTCGGCTAAAAACT
151362 AATCGG
Statistics
Matches: 1384, Mismatches: 210, Indels: 153
0.79 0.12 0.09
Matches are distributed among these distances:
320 9 0.01
321 65 0.05
322 105 0.08
323 142 0.10
324 130 0.09
325 49 0.04
326 63 0.05
327 2 0.00
328 7 0.01
329 76 0.05
330 82 0.06
331 238 0.17
332 131 0.09
333 165 0.12
334 14 0.01
335 1 0.00
336 2 0.00
339 4 0.00
340 36 0.03
341 25 0.02
342 12 0.01
343 22 0.02
344 4 0.00
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.33
Consensus pattern (326 bp):
GTACACGATTTCGGCTAAAAACTGACCCGAAGTTTTTTCTGAATTTTTTGCCACAATACTCAGAA
AAAATATATAATTCAAGCACAAAAAGATTGACGGTCTTTTCACGCTTTAATATCATTTTTCAATT
TTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTA
AATCTAATGTGGCAGAGCCTGAGATTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTCTGCC
AAAAATCATGCAAAACTGAGTCGGGGCCCCCGAAACGCGTTTTTAAGCCAAAAACCATGATGGTT
A
Found at i:150639 original size:653 final size:654
Alignment explanation
Indices: 149365--151361 Score: 2644
Period size: 655 Copynumber: 3.0 Consensus size: 654
149355 ATAGCCAAAC
* ** * ** *
149365 GTACACGA-TTTCGGCTAAAAATTGAGACGAAATTTTTTTTTCTCAATTTTTTGTGACAATAGTC
1 GTACACGATTTTCGGCTAAAAACTGACCCG--ATTTTTTTTTCTGAATTTTTTGCCACAATACTC
* * * * *
149429 ATAAAAAATATATAATTTC-ACGCCAAAAAAATTGAAGGAT-TTTTCACACTTCTAATATCATTT
64 AAAAAAAATATATAA-TTCAACACCAAAAAAATTGATGG-TCTTTTCACGCTTTTAATATCATTT
* *
149492 TTCC-ATTTTTTT--GAATTAATTTCTAATTAAAACGAAACAAGATTCAGATACTCGTAAAAAT-
127 TTCCAATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGT-AAAATC
* * * * * **
149553 AAATCGTTAAATCGAATTTGGCTGGGATTTGGTTCAATGAATATAGATATTTCAAGGAGTCTTTA
191 AAATCCTTATATCCAATGTGGCTGGCATTTGGTTTGATGAATATAGATATTTCAAGGAGTCTTTA
** * * * * * *
149618 AACC-AAAATCATGCAAAACTGAGCCGGGG-TCCCGGAACGTGGTTTTAGCAAAAAACCGTGATG
256 CGCCAAAAATCATGCAAAATTGAGTCGGGGCT-CGGGAACGCGTTTTTAGCGAAAAACCGTGATG
* ** * * * *
149681 GTTACTACTGGATTTCAGCGAAACTTTTGCAAAAACTGACCCGAAAAATTTTTCCTCAAATTTTT
320 GTTAGTACACGATTTC-G-G---C---T--AAAAACTGATCGGAAAAGTTTTTTCTC-AATTTTT
* * * * * * **** *
149746 TACCACAATAGTCAGAAAAAAATACACAATTCAATGCAAAAAAAAATTGA-AATATTTTCTCGCT
374 TGCCACAATACTCAG-AAAAAATATATAATTCAACGC-AAAAAAGATTGACGGGCTTTTCACGCT
** * * * * *
149810 T-TAAATATTATTTTTCTATTTTTTTCCGAATCT-ATTTCTAATTAAATCGAAACAATATTCAGA
437 TCT-AATATCGTTTTTCCATTTTTCTCCGAAT-TAATTTTTAATTAAATTGAAACAAGATTCAGA
* * * *
149873 TGCTTGTAAAAACAAATATTTAAATCTAATGTGTCAGAGAGCCTGAGATTGGTTAGATGAATATA
500 TGCTAGTAAAAACAAATCTTTAAATCTAATGTGACTGAGAGCCTGAGATTGGTTAGATGAATATA
*
149938 GATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCCGAAACACCTT
565 GATATTTCAAGGAGTCTTTCTGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCCGAAACACGTT
* *
150003 TTTAACCCAAAAACCATAATGGTTA
630 TTTAGCCCAAAAACCATGATGGTTA
* * * *
150028 GTACATGATTTTCAGCTAAAAACTGACCCGA-TTTTTATTCTGAATTTTTTGCCACAATACTCAG
1 GTACACGATTTTCGGCTAAAAACTGACCCGATTTTTTTTTCTGAATTTTTTGCCACAATACTCAA
* *
150092 AAAAAATATATAATTCAACACCAAAAATATTGATGGTCTTTTCACGCTTTTAATATCATTATTCC
66 AAAAAATATATAATTCAACACCAAAAAAATTGATGGTCTTTTCACGCTTTTAATATCATTTTTCC
150157 AATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAATCAAATC
131 AATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAATCAAATC
*
150222 CTTATATCCAATGTGGCTGGCATTTGGTTTGATGAATATAGATATTTCAAGGAGTCTTTGCGCCA
196 CTTATATCCAATGTGGCTGGCATTTGGTTTGATGAATATAGATATTTCAAGGAGTCTTTACGCCA
*
150287 AAAATCATGCAAAATTGAGTCGGGGCTCGGGAACGCATTTTTAGCGAAAAACCGTGATGGTTAGT
261 AAAATCATGCAAAATTGAGTCGGGGCTCGGGAACGCGTTTTTAGCGAAAAACCGTGATGGTTAGT
150352 ACACGATTTCGGCTAAAAACTGATCGGAAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAA
326 ACACGATTTCGGCTAAAAACTGATCGGAAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAA
*
150417 AAAATATATAATTCAACGCCAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTCCAT
391 AAAATATATAATTCAACGCAAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTCCAT
* * *
150482 TTTTCTCTGAATTAATTTTTAATTAAATTGAAACAAGATTTAGATGCTCGTAAAAACAAATCTTT
456 TTTTCTCCGAATTAATTTTTAATTAAATTGAAACAAGATTCAGATGCTAGTAAAAACAAATCTTT
* *
150547 AAATCTAATGTGACTGAGAGCCTGAGATTGGTTATATGAATATAGATATTTCAAGAAGTCTTTCT
521 AAATCTAATGTGACTGAGAGCCTGAGATTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTCT
* * * ** *
150612 ACCAAAAATCATGCAAAACTAAGCCGGGTCCCTTGAAA-AGCGTTTTTAGGCCAAAAACCATGAT
586 GCCAAAAATCATGCAAAACTGAGCCGGGGCCCCCGAAACA-CGTTTTTAGCCCAAAAACCATGAT
150676 GGTTA
650 GGTTA
* *
150681 GTACACGATTTTCGGCTAAAATCTGACCCGATTTTTTTTTTCAGAATTTTTTGCCACAATACTCA
1 GTACACGATTTTCGGCTAAAAACTGACCCGA-TTTTTTTTTCTGAATTTTTTGCCACAATACTCA
*
150746 AAAAAAATATATAATTCAACACCAAAAAGATTGATGGTCTTTTCACGCTTTTAATATCATTTTTC
65 AAAAAAATATATAATTCAACACCAAAAAAATTGATGGTCTTTTCACGCTTTTAATATCATTTTTC
* *
150811 CAATTTTTTTCCGAATTAATTTCTAATTAAATCAAAACAAGATTCAGATGCTCGAAAAATCAAAT
130 CAATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAATCAAAT
* * * *
150876 CCTTATATCCAATGTGGCTGACATTTGGTTTGATGAATATAGATATTTCAAGAATTCTTTCCGCC
195 CCTTATATCCAATGTGGCTGGCATTTGGTTTGATGAATATAGATATTTCAAGGAGTCTTTACGCC
*
150941 AAAAATCATGCAAAATTGAGTCGGGGCTCGGGAATGCGTTTTTAAG-GCAAAAACCGTGATGGTT
260 AAAAATCATGCAAAATTGAGTCGGGGCTCGGGAACGCGTTTTT-AGCG-AAAAACCGTGATGGTT
* * *
151005 AGTACATGATTTCGGCTAAAAACTGATCGAAAAAGTTTTTTCTTAATTTTTTGCCACAATACTCA
323 AGTACACGATTTCGGCTAAAAACTGATCGGAAAAGTTTTTTCTCAATTTTTTGCCACAATACTCA
*
151070 G-AAAAATATATAATTCAACGGAAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTC
388 GAAAAAATATATAATTCAACGCAAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTC
*
151134 CATTTTTC-CCGAATTAATTTTTAATTAAATTAAAACAAGATTCAGATGCTAGTAAGAAAAACAA
453 CATTTTTCTCCGAATTAATTTTTAATTAAATTGAAACAAGATTCAGATGCTAGT---AAAAACAA
*** * * * *
151198 ATCCAGAAATCTAATGTGGCTCAGAGCCTGAGATTAGTTAGATGAATATAGATATTTTAAGGAGT
515 ATCTTTAAATCTAATGTGACTGAGAGCCTGAGATTGGTTAGATGAATATAGATATTTCAAGGAGT
* * * *
151263 CTTTCTGCCAAAAATCATGCAAAACTGAGTCGGGGCTCCCGAAACGCGTTTTTAGCCAAAAAAAC
580 CTTTCTGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCCGAAACACGTTTTTAGCC-CAAAAAC
151328 CATGATGGTTA
644 CATGATGGTTA
151339 GTACACGA-TTTCGGCTAAAAACT
1 GTACACGATTTTCGGCTAAAAACT
151362 AATCGG
Statistics
Matches: 1188, Mismatches: 124, Indels: 50
0.87 0.09 0.04
Matches are distributed among these distances:
652 12 0.01
653 243 0.20
654 62 0.05
655 350 0.29
656 81 0.07
657 126 0.11
658 25 0.02
660 5 0.00
661 80 0.07
662 9 0.01
663 13 0.01
664 118 0.10
665 63 0.05
666 1 0.00
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.33
Consensus pattern (654 bp):
GTACACGATTTTCGGCTAAAAACTGACCCGATTTTTTTTTCTGAATTTTTTGCCACAATACTCAA
AAAAAATATATAATTCAACACCAAAAAAATTGATGGTCTTTTCACGCTTTTAATATCATTTTTCC
AATTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAATCAAATC
CTTATATCCAATGTGGCTGGCATTTGGTTTGATGAATATAGATATTTCAAGGAGTCTTTACGCCA
AAAATCATGCAAAATTGAGTCGGGGCTCGGGAACGCGTTTTTAGCGAAAAACCGTGATGGTTAGT
ACACGATTTCGGCTAAAAACTGATCGGAAAAGTTTTTTCTCAATTTTTTGCCACAATACTCAGAA
AAAATATATAATTCAACGCAAAAAAGATTGACGGGCTTTTCACGCTTCTAATATCGTTTTTCCAT
TTTTCTCCGAATTAATTTTTAATTAAATTGAAACAAGATTCAGATGCTAGTAAAAACAAATCTTT
AAATCTAATGTGACTGAGAGCCTGAGATTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTCT
GCCAAAAATCATGCAAAACTGAGCCGGGGCCCCCGAAACACGTTTTTAGCCCAAAAACCATGATG
GTTA
Done.