genome.fa.s19216.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019216.1 Corchorus olitorius cultivar O-4 contig19249, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60110

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
522--560	19	2.1	19	85	4	53	2	20	0	76	0.90
523--580	27	2.1	27	87	12	84	3	20	0	75	0.94
2157--2299	72	2.0	72	90	0	223	37	18	11	32	1.87
2471--2530	31	1.9	31	86	6	86	23	15	3	58	1.52
3823--3873	25	2.0	25	100	0	102	47	15	11	25	1.80
8044--8183	70	2.0	70	92	0	235	32	10	27	30	1.90
14100--14129	12	2.4	12	94	5	51	6	23	20	50	1.71
17221--17453	117	2.0	114	92	2	385	28	16	15	39	1.89
22327--22489	22	7.5	21	71	13	89	36	15	10	37	1.82
22356--22489	44	3.1	43	78	6	135	37	16	10	35	1.83
22578--22662	22	3.7	22	72	10	73	32	14	14	38	1.86
22644--22771	22	5.9	22	73	8	109	37	13	12	36	1.82
22646--22771	44	2.9	44	82	8	134	37	12	12	37	1.82
27717--30730	645	4.6	634	78	9	2604	36	16	13	33	1.88
27717--30730	322	9.2	319	76	9	2532	36	16	13	33	1.88
30687--30720	11	3.0	11	87	8	50	38	14	2	44	1.61
30730--32826	330	6.3	328	76	7	1735	36	16	14	32	1.88
32856--33470	332	1.9	331	84	4	846	36	14	13	34	1.87
34128--34311	90	2.0	89	84	6	237	35	17	22	25	1.95
36505--36867	195	1.9	195	95	0	663	37	11	21	30	1.88
37181--37242	27	2.3	27	81	15	67	45	4	3	46	1.40
38795--38853	29	2.0	29	90	0	91	38	10	8	42	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38824--38898	22	3.4	22	83	3	98	42	9	10	37	1.72
39277--39310	12	2.9	11	87	12	50	52	0	2	44	1.16
41481--41514	18	1.9	18	94	5	61	14	0	26	58	1.36
53252--53284	8	4.1	8	100	0	66	36	12	39	12	1.80
54444--54482	2	19.5	2	94	0	69	51	0	2	46	1.14
54750--54854	22	4.8	22	71	2	68	41	17	5	35	1.73

Tables:   1

The End!