Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019217.1 Corchorus olitorius cultivar O-4 contig19250, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6172
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.34


Found at i:3108 original size:21 final size:21

Alignment explanation


    Indices: 3091--3130  Score: 80
    Period size: 21  Copynumber: 1.9  Consensus size: 21

       3081 GCTTCTCAAT

                                 
       3091 TAGCACTTCAACAATCTCTAA
          1 TAGCACTTCAACAATCTCTAA

                               
       3112 TAGCACTTCAACAATCTCT
          1 TAGCACTTCAACAATCTCT

       3131 GGAAACCAAA


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   19  1.00

ACGTcount: A:0.35, C:0.30, G:0.05, T:0.30


Consensus pattern (21 bp):   
TAGCACTTCAACAATCTCTAA

Found at i:4645 original size:20 final size:20

Alignment explanation


    Indices: 4620--4661  Score: 84
    Period size: 20  Copynumber: 2.1  Consensus size: 20

       4610 ACCGACGCTT

                                
       4620 ATCTCGCAGCTTTCAATTTC
          1 ATCTCGCAGCTTTCAATTTC

                                
       4640 ATCTCGCAGCTTTCAATTTC
          1 ATCTCGCAGCTTTCAATTTC

              
       4660 AT
          1 AT

       4662 TCTTGACTTT


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   22  1.00

ACGTcount: A:0.21, C:0.29, G:0.10, T:0.40


Consensus pattern (20 bp):   
ATCTCGCAGCTTTCAATTTC
Done.