Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01019218.1 Corchorus olitorius cultivar O-4 contig19251, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 151268
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.32
Found at i:1238 original size:2 final size:2
Alignment explanation
Indices: 1231--1261 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
1221 AATATTCAAT
1231 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1262 TTAATTATTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:2991 original size:178 final size:172
Alignment explanation
Indices: 2688--3061 Score: 457
Period size: 178 Copynumber: 2.1 Consensus size: 172
2678 GGAAGTTTGA
*
2688 AAAAATTATGTAATATTAAGTAGACCGTCTATTTCCGTTAACCGAAATTCTTTAGAAGCATTTTT
1 AAAAATTATATAATATTAAGTAGACCGTCTATTTCCGTTAACCGAAATTCTTTAGAAGCATTTTT
* *
2753 TTATACCTTGAACATTAAATTTAGTTTTCAAGTCCTTCATGAAAGTTGTAGATCATGGAACAACC
66 TGATACCTTGAACATTAAATTTAGTTTTCAAGTCCTTCATGAAAATTGTAGATCATGGAACAACC
*
2818 TTTCAAGAGACACTTGAATCATCTCAATCAGACATCTGGAGC
131 TTTCAAGAGACACTTAAATCATCTCAATCAGACATCTGGAGC
* * * *
2860 AAAAGTTATATAATATTAAGTGGACCGTCTATTTCCGTTAACCGAAACAATAAATTTTTCGGAAG
1 AAAAATTATATAATATTAAGTAGACCGTCTATTTCCGTTAACCG--A-AAT---TCTTT-AGAAG
* *
2925 CA-TTTTTGGTA-CTTGAAACATTAAATTTAGTTTTCGAGTCCTTCATGAAAATTGTAGATCATG
59 CATTTTTTGATACCTTG-AACATTAAATTTAGTTTTCAAGTCCTTCATGAAAATTGTAGATCATG
* * * * * * * * *
2988 GAACAATCTTTTAATAGACACTTAAATCACCTTAATCGGATAACCGGAG-
123 GAACAACCTTTCAAGAGACACTTAAATCATCTCAATCAGACATCTGGAGC
* *
3037 AGAAAATTATATAATGTTAAATAGA
1 A-AAAATTATATAATATTAAGTAGA
3062 TTGTTTAGGC
Statistics
Matches: 170, Mismatches: 23, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
172 41 0.24
174 1 0.01
175 3 0.02
177 5 0.03
178 114 0.67
179 6 0.04
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.34
Consensus pattern (172 bp):
AAAAATTATATAATATTAAGTAGACCGTCTATTTCCGTTAACCGAAATTCTTTAGAAGCATTTTT
TGATACCTTGAACATTAAATTTAGTTTTCAAGTCCTTCATGAAAATTGTAGATCATGGAACAACC
TTTCAAGAGACACTTAAATCATCTCAATCAGACATCTGGAGC
Found at i:4049 original size:16 final size:17
Alignment explanation
Indices: 4019--4054 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
4009 ATTTTATGAC
*
4019 TATTGTTATTGTTATAT
1 TATTGTTATTATTATAT
4036 TATT-TTATTATTATAT
1 TATTGTTATTATTATAT
4052 TAT
1 TAT
4055 CACTATTAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 14 0.78
17 4 0.22
ACGTcount: A:0.28, C:0.00, G:0.06, T:0.67
Consensus pattern (17 bp):
TATTGTTATTATTATAT
Found at i:4665 original size:16 final size:16
Alignment explanation
Indices: 4640--4698 Score: 66
Period size: 16 Copynumber: 3.7 Consensus size: 16
4630 TATGACTTCC
*
4640 TTTCCCTTCCTTCCTA
1 TTTCCTTTCCTTCCTA
* *
4656 TTTCCTTTCCCTTGCTG
1 TTTCCTTT-CCTTCCTA
4673 TTTCCTTTCCTTCCTA
1 TTTCCTTTCCTTCCTA
*
4689 TCT-CTTTCCT
1 TTTCCTTTCCT
4699 CTCTACCAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
15 7 0.19
16 15 0.42
17 14 0.39
ACGTcount: A:0.03, C:0.39, G:0.03, T:0.54
Consensus pattern (16 bp):
TTTCCTTTCCTTCCTA
Found at i:4847 original size:76 final size:75
Alignment explanation
Indices: 4716--4867 Score: 286
Period size: 76 Copynumber: 2.0 Consensus size: 75
4706 AAACACACTC
*
4716 TAAGAGGGAAACGAATCGAAGTGAAGCAGAAATTAGAGAAAGAAGCTAACGAAGAAAAAGATAAA
1 TAAGAGGGAAAAGAATCGAAGTGAAGCAGAAATTAGAGAAAGAAGCTAACGAAGAAAAAGATAAA
4781 TGGTAAAGGT
66 TGGTAAAGGT
4791 TAAGAGGGGAAAAGAATCGAAGTGAAGCAGAAATTAGAGAAAGAAGCTAACGAAGAAAAAGATAA
1 TAAGA-GGGAAAAGAATCGAAGTGAAGCAGAAATTAGAGAAAGAAGCTAACGAAGAAAAAGATAA
4856 ATGGTAAAGGT
65 ATGGTAAAGGT
4867 T
1 T
4868 GCCTTGGAAG
Statistics
Matches: 75, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
75 5 0.07
76 70 0.93
ACGTcount: A:0.52, C:0.06, G:0.28, T:0.14
Consensus pattern (75 bp):
TAAGAGGGAAAAGAATCGAAGTGAAGCAGAAATTAGAGAAAGAAGCTAACGAAGAAAAAGATAAA
TGGTAAAGGT
Found at i:37127 original size:319 final size:319
Alignment explanation
Indices: 36538--38418 Score: 970
Period size: 318 Copynumber: 5.8 Consensus size: 319
36528 TCATATTTAT
* *
36538 TACACGATTTCGGTTAAAATTTTGTAAAAATTGAACCAAAAGATATTTCCTCAATTTTTAGCCAT
1 TACACGATTTCGGCTAAAATTTTGTAAAAATTGAACCAAAAGATATTTCCTCAATTTTTAGCAAT
* * *
36603 AATACTATTAAAAAATATATAATTCAACGTTAAAAAAAATTGAAGGGCTTTTGACGCTTTTGATA
66 AATACTATTAAAAAATAAATAATTCAACGTTAAAAAAAATTGAAGGACTTTTGACGCTTTTAATA
** *
36668 TCGTTTTTCATATTTTTTATGAATTAATTTCTATTAAATCGAAACATGATTCAGATGCTTGTAAA
131 TAATTTTTCATATTTTTTA-GAATTAATTTCTATTAAATCGAAACAAGATTCAGATGCTTGTAAA
* * * * *
36733 AACAAATCCTTAAATGCAATGTGGCTAAGATTTTATTAGATGTATATGGATATTTTAAGGAGTGT
195 AACAAATCCTTAAATGCAATGTGGATAAGATTTGATTACATGTATATAGATATTTCAAGGAGTGT
* *
36798 CGGCGCCAAAAACCATGCAAAACTT-AGCCGGATCCCTGAAACGCATTTTTAGCCAAAAACTG
260 CGGCGCCAAAAACCATGCAAAA-TTAAGCCGG-GCCCCGAAACGCATTTTTA-CCAAAAACTG
* *** * *
36860 TACACGATTTTGGCTAAAATTTTGTAAAAATTGATTTGAAAA-CTTTTTCCTCAATTTTT-G-AA
1 TACACGATTTCGGCTAAAATTTTGTAAAAATTGA-ACCAAAAGATATTTCCTCAATTTTTAGCAA
* * * * * *
36922 TAAAATACTCA-TAAAATATAAATAATTTAACGTT-AAAAAGATTGGAGGACTTTTTATGCTTTT
65 T--AATACT-ATTAAAAAATAAATAATTCAACGTTAAAAAAAATTGAAGGACTTTTGACGCTTTT
*
36985 AATATAATTTTTCATA-TTTTTA-AATTAATTTCTAATTAAATCGAATCAAGATTCAGATGCTTG
127 AATATAATTTTTCATATTTTTTAGAATTAATTTCT-ATTAAATCGAAACAAGATTCAGATGCTTG
* *
37048 TAAAAACAAATCCTTAAGTGCAATGTGGATGAGATTTGATTACATGTATATAGATATTTCAAGGA
191 TAAAAACAAATCCTTAAATGCAATGTGGATAAGATTTGATTACATGTATATAGATATTTCAAGGA
* * *
37113 GTGTTGAG-GCCAAAAATCATGCAAAATTAAGCCGGGCCCCGAAACGCGTTTTTACCAAAAAATC
256 GTGTCG-GCGCCAAAAACCATGCAAAATTAAGCCGGGCCCCGAAACGCATTTTTACC-AAAAA--
37177 GCTATG
317 -C--TG
* * * * * * *
37183 CTTAGAACAAGATTTCGGCTAAAA-TTTGCAAAAAATG-ACCAGAAAAATTTTTTTCTCAAATTT
1 --T---ACACGATTTCGGCTAAAATTTTGTAAAAATTGAACCA-AAAGA-TATTTCCTCAATTTT
* * * * * *** * * *
37246 TCGCCACAATACTCA-AAAAAAAAAATATAATTCAACG-GCCAAAAATTTGAAAGACTTTTCACG
59 TAGCAATAATACT-ATTAAAAAATAA-ATAATTCAACGTTAAAAAAAATTGAAGGACTTTTGACG
* * * * *
37309 CTTCTAATATCATTTTTCCTATTTTTTCCGAATTAATTTCTAATTAAAACGAAACATA-ATTCAG
122 CTTTTAATATAATTTTTCATATTTTTT-AGAATTAATTTCT-ATTAAATCGAAACA-AGATTCAG
* * * * **
37373 ATGTTTGTAAAAAC-AA----T---GGC----TGG----GATTTGGTTAGATAAATATAGATATT
184 ATGCTTGTAAAAACAAATCCTTAAATGCAATGTGGATAAGATTTGATTACATGTATATAGATATT
* * * * * * * * *
37422 ACAAGGAGTCTCGGCGCCAGAAATCTTTCAAAATTGAA-CAGGGTCCC-AGAACGCGTTTTTAGC
249 TCAAGGAGTGTCGGCGCCAAAAACCATGCAAAATT-AAGCCGGGCCCCGA-AACGCATTTTTA-C
37485 CAAAAACCGTGATG
311 CAAAAA-C----TG
* * ** *
37499 ATTATTATTTAACGATTTCGGCGAAAATTTTACAAAAATTG-ACTCGAAAGATATTTCCTCAATT
1 -----TA---CACGATTTCGGCTAAAATTTTGTAAAAATTGAAC-CAAAAGATATTTCCTCAATT
* * * * ** * * *
37563 TTTAGCCATAATACTCA-TAAAAGATATATAATTCAATG-CCAAAAAGATTGAAGGGCTTTTCAC
57 TTTAGCAATAATACT-ATTAAAAAATAAATAATTCAACGTTAAAAAAAATTGAAGGACTTTTGAC
** * * * *
37626 GCTTTTAATATCGTTTTTCATATTTTTT-GTGAGTAGATTTCTAATTAAACCGAAACAAGATTTA
121 GCTTTTAATATAATTTTTCATATTTTTTAG-AATTA-ATTTCT-ATTAAATCGAAACAAGATTCA
** * * * * **
37690 GATGCTCCTAAAAGC-AATCCTTAAATGCAATGTGGCTAAGATTTTATTAGATAAATATAGATAT
183 GATGCTTGTAAAAACAAATCCTTAAATGCAATGTGGATAAGATTTGATTACATGTATATAGATAT
* ** * * ** * * * *
37754 TTCAAGGAGTATCGGCGTAAAAAATCATGCAAAACTGATTCGGGGCCCCGAAATGCGTTTTAAGC
248 TTCAAGGAGTGTCGGCGCCAAAAACCATGCAAAA-TTAAGCCGGGCCCCGAAACGCATTTTTA-C
*
37819 AAAAAACCGTGATGGTTTG
311 CAAAAA-C---------TG
* ** * **** * * *
37838 TACACGATTTTGGCTAAAATTTTACAAAAAAAT-AAATTGATGAATTTTTCCTCAATTTTTAGCC
1 TACACGATTTCGGCTAAAATTTT-GTAAAAATTGAACCAAAAG-ATATTTCCTCAATTTTTAGCA
* * ** ** *** *
37902 ACAATACTCA-T-AAAAATATATTCTTCAACG-CGAAAAAAATTGAAGTTTTTTTTCACG-TTTC
64 ATAATACT-ATTAAAAAATAAATAATTCAACGTTAAAAAAAATTGAAG-GACTTTTGACGCTTT-
** * * * * *
37963 TAATATCGTTTTTCCTATTGTTTTCCGATTTAATTTCTAATTAAAACGAAACATGATTCAGATG-
126 TAATATAATTTTTCATATT-TTTT-AGAATTAATTTCT-ATTAAATCGAAACAAGATTCAGATGC
* * * * * *
38027 TT-T-----CTAA-----AAA--CAA--TGGCTGAGATTTGGTTAGATGAATATTA-ATATTTCA
188 TTGTAAAAACAAATCCTTAAATGCAATGTGGATAAGATTTGATTACATGTATA-TAGATATTTCA
* * * * * * * **
38076 AGGAGTCTTGGCGCCATAAATCATTCAAATTTGAA-CCGGGCCCCGGAACGTGTTTTTAGCCAAA
252 AGGAGTGTCGGCGCCAAAAACCATGCAAAATT-AAGCCGGGCCCCGAAACGCATTTTTA-CCAAA
38140 AACCGTCATG
315 AA----C-TG
** * *
38150 ATTATTACACGATTTCGGCTAAAATTTTACAAAAATTGAACCGAAAGATAGTTCCTCAATTTTTA
1 -----TACACGATTTCGGCTAAAATTTTGTAAAAATTGAACCAAAAGATATTTCCTCAATTTTTA
* * * * *
38215 GGC-ATAATACTCA-TAAAAAATATATAATTCAATGTCAAAAAAAAATTGAAGGGCTTTTCACGC
61 -GCAATAATACT-ATTAAAAAATAAATAATTCAACGT-TAAAAAAAATTGAAGGACTTTTGACGC
* ** * * *
38278 TTTTGATATCGTTTTTCATATATTTTATGAATTAATTTCTATTAAATCGAAACCAGATTTAGATG
123 TTTTAATATAATTTTTCATATTTTTTA-GAATTAATTTCTATTAAATCGAAACAAGATTCAGATG
* * * * * *
38343 CTTGTAAAAACAAATTCTTAAATGCAATGTGGCTAACATTTTATTAGATGAATATAGATATTTCA
187 CTTGTAAAAACAAATCCTTAAATGCAATGTGGATAAGATTTGATTACATGTATATAGATATTTCA
*
38408 ATGAGTGTCGG
252 AGGAGTGTCGG
38419 GGCCCCGAAA
Statistics
Matches: 1225, Mismatches: 222, Indels: 214
0.74 0.13 0.13
Matches are distributed among these distances:
312 2 0.00
314 1 0.00
315 2 0.00
316 131 0.11
317 97 0.08
318 203 0.17
319 178 0.15
320 33 0.03
321 40 0.03
322 77 0.06
323 10 0.01
324 2 0.00
325 4 0.00
326 4 0.00
327 14 0.01
328 48 0.04
329 49 0.04
330 9 0.01
331 56 0.05
332 144 0.12
333 85 0.07
334 31 0.03
335 2 0.00
339 3 0.00
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.34
Consensus pattern (319 bp):
TACACGATTTCGGCTAAAATTTTGTAAAAATTGAACCAAAAGATATTTCCTCAATTTTTAGCAAT
AATACTATTAAAAAATAAATAATTCAACGTTAAAAAAAATTGAAGGACTTTTGACGCTTTTAATA
TAATTTTTCATATTTTTTAGAATTAATTTCTATTAAATCGAAACAAGATTCAGATGCTTGTAAAA
ACAAATCCTTAAATGCAATGTGGATAAGATTTGATTACATGTATATAGATATTTCAAGGAGTGTC
GGCGCCAAAAACCATGCAAAATTAAGCCGGGCCCCGAAACGCATTTTTACCAAAAACTG
Found at i:37803 original size:650 final size:643
Alignment explanation
Indices: 36863--38419 Score: 1898
Period size: 650 Copynumber: 2.4 Consensus size: 643
36853 AAAACTGTAC
* ** * * * *
36863 ACGATTTTGGCTAAAATTTTGTAAAAATTGATTTGAAA-ACTTTTTCCTCAATTTTT-GAATAAA
1 ACGATTTCGGCTAAAATTTTACAAAAATTGACTCGAAAGA-TATTTCCTCAATTTTTAGCAT--A
* * * * ** * * * * *
36926 ATACTCATAAAATATAAATAATTTAACGTTAAAAAGATTGGAGGACTTTTTATGCTTTTAATATA
63 ATACTCATAAAAAATATATAATTCAATGCAAAAAAGATTGAAGGGCTTTTCACGCTTTTAATATC
* ** * *
36991 ATTTTTCATA-TTTTTAAATTAATTTCTAATTAAATCGAATCAAGATTCAGATGCTTGTAAAAAC
128 GTTTTTCATATTTTTTTGATTAATTTCTAATTAAATCGAAACAAGATTTAGATGCTTGTAAAAAC
* * * * * * *
37055 AAATCCTTAAGTGCAATGTGGATGAGATTTGATTACATGTATATAGATATTTCAAGGAGTGTTGA
193 AAATCCTTAAATGCAATGTGGCTAAGATTTTATTAGATGAATATAGATATTTCAAGGAGTGTCG-
* * * *
37120 GGCCAAAAATCATGCAAAATTAAGCCGGGCCCCGAAACGCGTTTTTACCAAAAAATCGCT-ATGC
257 GGCAAAAAATCATGCAAAATGAAGCCGGGCCCCGAAACGCGTTTTAACCAAAAAACCG-TGATGC
* * * *
37184 TTAGAACAAGATTTCGGCTAAAA-TTTGC-AAAAAATGACCAGAAAAATTTTTTTCTCAAATTTT
321 TTAGAACAAGATTTCGGCTAAAATTTTACAAAAAAATAAACAGAAAAA-TTTTTCCTCAAATTTT
* * *
37247 CGCCACAATACTCAAAAAAAAAAATATAATTCAACG-GCCAAAAATTTGAAAG-ACTTTTCACGC
385 AGCCACAATACTC--AAAAAAAAATATAATTCAACGCG-AAAAAAATTG-AAGTACTTTTCACGC
37310 TTCTAATATCATTTTTCCTATT-TTTTCCGAATTAATTTCTAATTAAAACGAAACATAATTCAGA
446 TTCTAATATCATTTTTCCTATTGTTTTCCGAATTAATTTCTAATTAAAACGAAACATAATTCAGA
* *
37374 TGTTTGTAAAAACAATGGCTGGGATTTGGTTAGATAAATA-TAGATATTACAAGGAGTCTCGGCG
511 TGTTTCTAAAAACAATGGCTGAGATTTGGTTAGATAAATATTA-ATATTACAAGGAGTCTCGGCG
* * *
37438 CCAGAAATCTTTCAAAATTGAACAGGGTCCCAGAACGCGTTTTTAGCCAAAAACCGTGATGATTA
575 CCAGAAATCATTCAAAATTGAACAGGGCCCCAGAACGCGTTTTTAGCCAAAAACCGTCATGATTA
37503 TTATTTA
640 TTA---A
*
37510 ACGATTTCGGCGAAAATTTTACAAAAATTGACTCGAAAGATATTTCCTCAATTTTTAGCCATAAT
1 ACGATTTCGGCTAAAATTTTACAAAAATTGACTCGAAAGATATTTCCTCAATTTTTAG-CATAAT
* *
37575 ACTCATAAAAGATATATAATTCAATGCCAAAAAGATTGAAGGGCTTTTCACGCTTTTAATATCGT
65 ACTCATAAAAAATATATAATTCAATGCAAAAAAGATTGAAGGGCTTTTCACGCTTTTAATATCGT
* * ** *
37640 TTTTCATATTTTTTGTGAGTAGATTTCTAATTAAACCGAAACAAGATTTAGATGCTCCTAAAAGC
130 TTTTCATATTTTTT-TGATTA-ATTTCTAATTAAATCGAAACAAGATTTAGATGCTTGTAAAAAC
* *
37705 -AATCCTTAAATGCAATGTGGCTAAGATTTTATTAGATAAATATAGATATTTCAAGGAGTATCGG
193 AAATCCTTAAATGCAATGTGGCTAAGATTTTATTAGATGAATATAGATATTTCAAGGAGTGTCGG
* ** * * * *
37769 CGTAAAAAATCATGCAAAACTGATTCGGGGCCCCGAAATGCGTTTTAAGCAAAAAACCGTGATGG
258 -GCAAAAAATCATGCAAAA-TGAAGCCGGGCCCCGAAACGCGTTTTAACCAAAAAACCGTGATGC
* * * * ** ** *
37834 TTTGTACACGATTTTGGCTAAAATTTTACAAAAAAATAAATTGATGAATTTTTCCTCAATTTTTA
321 TTAGAACAAGATTTCGGCTAAAATTTTACAAAAAAATAAACAGAAAAATTTTTCCTCAAATTTTA
* * ** ** *
37899 GCCACAATACTCATAAAAATATATTCTTCAACGCGAAAAAAATTGAAGTTTTTTTTCACGTTTCT
386 GCCACAATACTCAAAAAAAAATATAATTCAACGCGAAAAAAATTGAAG-TACTTTTCACGCTTCT
* * *
37964 AATATCGTTTTTCCTATTGTTTTCCGATTTAATTTCTAATTAAAACGAAACATGATTCAGATGTT
450 AATATCATTTTTCCTATTGTTTTCCGAATTAATTTCTAATTAAAACGAAACATAATTCAGATGTT
* * * *
38029 TCTAAAAACAATGGCTGAGATTTGGTTAGATGAATATTAATATTTCAAGGAGTCTTGGCGCCATA
515 TCTAAAAACAATGGCTGAGATTTGGTTAGATAAATATTAATATTACAAGGAGTCTCGGCGCCAGA
* * * * *
38094 AATCATTCAAATTTGAACCGGGCCCCGGAACGTGTTTTTAGCCAAAAACCGTCATGATTATTAC
580 AATCATTCAAAATTGAACAGGGCCCCAGAACGCGTTTTTAGCCAAAAACCGTCATGATTATTAA
*
38158 ACGATTTCGGCTAAAATTTTACAAAAATTGAAC-CGAAAGATAGTTCCTCAATTTTTAGGCATAA
1 ACGATTTCGGCTAAAATTTTACAAAAATTG-ACTCGAAAGATATTTCCTCAATTTTTA-GCATAA
* *
38222 TACTCATAAAAAATATATAATTCAATGTCAAAAAAAAATTGAAGGGCTTTTCACGCTTTTGATAT
64 TACTCATAAAAAATATATAATTCAATG-C-AAAAAAGATTGAAGGGCTTTTCACGCTTTTAATAT
* *
38287 CGTTTTTCATATATTTTATGAATTAATTTCT-ATTAAATCGAAACCAGATTTAGATGCTTGTAAA
127 CGTTTTTCATAT-TTTTTTG-ATTAATTTCTAATTAAATCGAAACAAGATTTAGATGCTTGTAAA
* * *
38351 AACAAATTCTTAAATGCAATGTGGCTAACATTTTATTAGATGAATATAGATATTTCAATGAGTGT
190 AACAAATCCTTAAATGCAATGTGGCTAAGATTTTATTAGATGAATATAGATATTTCAAGGAGTGT
38416 CGGG
255 CGGG
38420 GCCCCGAAAC
Statistics
Matches: 780, Mismatches: 107, Indels: 44
0.84 0.11 0.05
Matches are distributed among these distances:
647 111 0.14
648 94 0.12
649 137 0.18
650 231 0.30
651 193 0.25
652 14 0.02
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.34
Consensus pattern (643 bp):
ACGATTTCGGCTAAAATTTTACAAAAATTGACTCGAAAGATATTTCCTCAATTTTTAGCATAATA
CTCATAAAAAATATATAATTCAATGCAAAAAAGATTGAAGGGCTTTTCACGCTTTTAATATCGTT
TTTCATATTTTTTTGATTAATTTCTAATTAAATCGAAACAAGATTTAGATGCTTGTAAAAACAAA
TCCTTAAATGCAATGTGGCTAAGATTTTATTAGATGAATATAGATATTTCAAGGAGTGTCGGGCA
AAAAATCATGCAAAATGAAGCCGGGCCCCGAAACGCGTTTTAACCAAAAAACCGTGATGCTTAGA
ACAAGATTTCGGCTAAAATTTTACAAAAAAATAAACAGAAAAATTTTTCCTCAAATTTTAGCCAC
AATACTCAAAAAAAAATATAATTCAACGCGAAAAAAATTGAAGTACTTTTCACGCTTCTAATATC
ATTTTTCCTATTGTTTTCCGAATTAATTTCTAATTAAAACGAAACATAATTCAGATGTTTCTAAA
AACAATGGCTGAGATTTGGTTAGATAAATATTAATATTACAAGGAGTCTCGGCGCCAGAAATCAT
TCAAAATTGAACAGGGCCCCAGAACGCGTTTTTAGCCAAAAACCGTCATGATTATTAA
Found at i:40061 original size:646 final size:651
Alignment explanation
Indices: 39167--40632 Score: 1754
Period size: 646 Copynumber: 2.2 Consensus size: 651
39157 TGTTTTTCAT
* * * *
39167 ATTTCTAATTAAATCTATACAAGGTTTAGATGCTCGTAAAAACAAATCCTTATATGCAATGTGGC
1 ATTTCTAATTAAATCAAAACAAGATTTAGATGCTCGTAAAAACAAATCCTTAAATGCAATGTGGC
* *
39232 TAAGATTTTATTAGATGAATATAGATATTTGAAGGAGTGTCGGCGCCAAAAACCATGCACAACTG
66 TAAGATTTTATTAGATGAATATAGATATTTCAAGGAGTGTCGGCGCCAAAAACCATGCAAAACTG
* *
39297 AGCCGGAGCCCCGAAACGCGTTTTAAGCAAAAAACCGTGATGGTACTTTCTACACAATTTCGGCT
131 AGCCGG-GCCCCAAAACGCGTTTTTAGCAAAAAACCGTGATGG-A-TTTCTACACAATTTCGGCT
* * * *
39362 AAAATTTTACAAAAAAATGACTTGAAAGATTTTTCCTCAATTTTTAGCCACAATACTCATAAAAA
193 AAAATTTTAAAAAAAAAAGACTTGAAAAAATTTTCCTCAATTTTTAGCCACAATACTCATAAAAA
* *
39427 ATATACAATTCAACGCCAAAAAAATTG-AAGTACTTTTCACGCTTCCAATATCG-TT-T-TTTTT
258 ATATACAATTAAAAGCCAAAAAAATTGTAA-TACTTTTCACGCTTCCAATATCGTTTATATTTTT
* ***
39488 T-CGAATTAATTTTTAATTAAAAT-GAAACATGATTCT-G-A-T-GT-TTGC-AA-AAA-CAA-T
322 TACGAATTAATTTTTAATT-AAATCGAAACAGGATT-TAGAACTCGTAAAACAAATAAAGCAATT
* * * * *
39542 GGCTGAGA-TTTGATTAGATAAATATAGATATTTCAAGGAGTCTCGGCGTCAAAAATCATTCAAA
385 GGCT-AAATTTTGATTAGATAAATATAGATATTTCAAGGAGTCTCGACGCCAAAAACCATGCAAA
* *
39606 ATTGA-ACTGGACCCCGGAACGCATTTTTAGCCAAAAACCATGACGATTA-TGACACGAT-TTCG
449 ACTGAGACTGGACCCCGAAACGCATTTTTAGCCAAAAACCATGACGATTAGT-ACACGATCTT-G
* * *
39668 GCTAAAATTTTGCAAAAATTGATCC-GAAAGATATTTC-CTCAATTTTTAGCCT-TAATACTCAT
512 GCTAAAATTTTGCAAAAAATGA-CCTGAAA-AT-TTTCTC-CAATTTTT-GCATAAAATACTCAT
* * *
39730 AAAAAAATATATAATTCAACATCAAAAAAATTTGAAGGGCTTTTCACGCTTTTAAAATTATTTTT
572 -AAAAAATATATAATTCAACACCAAAAAAA-TTGAAGGACTTTTCACGCTTTTAAAATCATTTTT
*
39795 CATATTTTTTATGTATTA
635 CATA-TTTTTATGAATTA
39813 ATTTCTAATTAAATCAAAACAAGATTTAGATGCTCGTAAAAACAAATCCTTAAATGCAATGTGGC
1 ATTTCTAATTAAATCAAAACAAGATTTAGATGCTCGTAAAAACAAATCCTTAAATGCAATGTGGC
* *
39878 TAAGATTTTATTAGATGAATATAGATATTTCAATGAGTGTCGGCGCAAAAAACCATGCAAAACTG
66 TAAGATTTTATTAGATGAATATAGATATTTCAAGGAGTGTCGGCGCCAAAAACCATGCAAAACTG
* * * ** *
39943 AGCCGTGGCTCCAAAACGCGTTTTTAGCAAAAAATCGTGATGG-TTTGTACATGATTTCGGGTAA
131 AGCCG-GGCCCCAAAACGCGTTTTTAGCAAAAAACCGTGATGGATTTCTACACAATTTCGGCTAA
40007 AATTTTGCAAAAAAAAAAAGACTTGAAAAAATTTTCCTCAATTTTTAGCCACAATACTCATAAAA
195 AATTTT---AAAAAAAAAAGACTTGAAAAAATTTTCCTCAATTTTTAGCCACAATACTCATAAAA
* * *
40072 AATATATAATTAAAAGCCAAAAAAATTGTAATGCTTTTCACGCTTCTAATATCGTTTTTCATATT
257 AATATACAATTAAAAGCCAAAAAAATTGTAATACTTTTCACGCTTCCAATATCG--TTT-ATATT
*
40137 TTTTATGAATTAATTTTTAATTAAATCGAAACAGGATTTAGATACTCGTAAAAACAAATCCTTAA
319 TTTTACGAATTAATTTTTAATTAAATCGAAACAGGATTTAGA-ACTCGT-AAAACAAA----TAA
* * * * *
40202 ATGTAATTTGGCTAAATTTTTATTAGATGAATATAGATATTTCAAGGAGTGTCGACGCCAAATAC
378 A-GCAA-TTGGCTAAATTTTGATTAGATAAATATAGATATTTCAAGGAGTCTCGACGCCAAAAAC
* * * * * * * **
40267 CATGCAAAACTGAGCCTGGGCCCTGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACGTG
441 CATGCAAAACTGAGACTGGACCCCGAAACGCATTTTTAGCCAAAAACCATGACGATTAGTACACG
*
40332 ATCTTGGCTAAAATTTTGCAAAAAATGACCTGAAAATTTTCTCCAATTTTTGGATAAAATACTCA
506 ATCTTGGCTAAAATTTTGCAAAAAATGACCTGAAAATTTTCTCCAATTTTTGCATAAAATACTCA
* * * *
40397 TAAAATATATATAATTTAACACCAAAAATATTGAAGGACTTTTCACGCTTTTAATATCATTTTTC
571 TAAAAAATATATAATTCAACACCAAAAAAATTGAAGGACTTTTCACGCTTTTAAAATCATTTTTC
*
40462 ATATTTTTCTGAATTA
636 ATATTTTTATGAATTA
* * * * * *
40478 ATTTCTAATTAAATAAAAAAAAGATTCAGATGCTTGTAAAAACAAATTCTTAAATCCAATGTGGC
1 ATTTCTAATTAAATCAAAACAAGATTTAGATGCTCGTAAAAACAAATCCTTAAATGCAATGTGGC
* * * * * * * *
40543 TGAGATTTGATTAGATGAATATGGATATCTCAAGGAGTCTTGGTGCCAAAAATCATGCAAAACTG
66 TAAGATTTTATTAGATGAATATAGATATTTCAAGGAGTGTCGGCGCCAAAAACCATGCAAAACTG
* *
40608 AGCCGGGGCCCCAGAACGCTTTTTT
131 AGCC-GGGCCCCAAAACGCGTTTTT
40633 TACACGATTT
Statistics
Matches: 699, Mismatches: 83, Indels: 57
0.83 0.10 0.07
Matches are distributed among these distances:
643 23 0.03
646 257 0.37
647 3 0.00
649 2 0.00
651 1 0.00
652 11 0.02
653 27 0.04
655 1 0.00
656 1 0.00
657 2 0.00
659 1 0.00
660 2 0.00
665 148 0.21
666 36 0.05
667 29 0.04
668 23 0.03
669 62 0.09
670 67 0.10
671 3 0.00
ACGTcount: A:0.38, C:0.15, G:0.14, T:0.33
Consensus pattern (651 bp):
ATTTCTAATTAAATCAAAACAAGATTTAGATGCTCGTAAAAACAAATCCTTAAATGCAATGTGGC
TAAGATTTTATTAGATGAATATAGATATTTCAAGGAGTGTCGGCGCCAAAAACCATGCAAAACTG
AGCCGGGCCCCAAAACGCGTTTTTAGCAAAAAACCGTGATGGATTTCTACACAATTTCGGCTAAA
ATTTTAAAAAAAAAAGACTTGAAAAAATTTTCCTCAATTTTTAGCCACAATACTCATAAAAAATA
TACAATTAAAAGCCAAAAAAATTGTAATACTTTTCACGCTTCCAATATCGTTTATATTTTTTACG
AATTAATTTTTAATTAAATCGAAACAGGATTTAGAACTCGTAAAACAAATAAAGCAATTGGCTAA
ATTTTGATTAGATAAATATAGATATTTCAAGGAGTCTCGACGCCAAAAACCATGCAAAACTGAGA
CTGGACCCCGAAACGCATTTTTAGCCAAAAACCATGACGATTAGTACACGATCTTGGCTAAAATT
TTGCAAAAAATGACCTGAAAATTTTCTCCAATTTTTGCATAAAATACTCATAAAAAATATATAAT
TCAACACCAAAAAAATTGAAGGACTTTTCACGCTTTTAAAATCATTTTTCATATTTTTATGAATT
A
Found at i:40177 original size:336 final size:328
Alignment explanation
Indices: 39541--40996 Score: 1255
Period size: 336 Copynumber: 4.4 Consensus size: 328
39531 GCAAAAACAA
* * * * * * *
39541 TGGCTGAGATTTGATTAGATAAATATAGATATTTCAAGGAGTCTCGGCGTCAAAAATCATTCAAA
1 TGGCTAAGATTTTATTAGATGAATATAGATATTTCAAGGAGTGTCGGCGCCAAAAACCATGCAAA
* * ** * * * * * *
39606 ATTGA-AC-TGGACCCCGGAACGCATTTTTAGCCAAAAACCATGACGATTA-TGACACGAT-TTC
66 ACTGAGCCGTGG--CCCAAAACGCGTTTTTAGCAAAAAACCGTGATGGTTAGT-ACATGATCTT-
** **
39667 GGCTAAAATTTTGCAAAAATTGATCC-GAAAGATATTTCCTCAATTTTTAGCCTTAATACTCATA
127 GGCTAAAATTTTGCAAAAAAAGA-CCTGAAA-AT-TTTCCTCAATTTTTAGCCAAAATACTCAT-
* * *
39731 AAAAAATATATAATTCAACATCAAAAAAATT-TGAAGGGCTTTTCACGCTTTTAAAATTATTTTT
188 AAAAAATATATAATT-AACACCAAAAAAATTGT-AA-GGCTTTTCACGCTTTTAATATCATTTTT
*
39795 CATATTTTTTATGTATTAATTTCTAATTAAATCAAAACAAGATTTAGATGCTCGTAAAAACAAAT
250 CATATTTTTTATGAATTAATTTCTAATTAAATCAAAACAAGATTTAGATGCTCGTAAAAACAAAT
39860 CCTTAAATGCAATG
315 CCTTAAATGCAATG
* *
39874 TGGCTAAGATTTTATTAGATGAATATAGATATTTCAATGAGTGTCGGCGCAAAAAACCATGCAAA
1 TGGCTAAGATTTTATTAGATGAATATAGATATTTCAAGGAGTGTCGGCGCCAAAAACCATGCAAA
* *
39939 ACTGAGCCGTGGCTCCAAAACGCGTTTTTAGCAAAAAATCGTGATGGTTTGTACATGAT-TTCGG
66 ACTGAGCCGTGGC-CCAAAACGCGTTTTTAGCAAAAAACCGTGATGGTTAGTACATGATCTT-GG
* * *
40003 GTAAAATTTTGCAAAAAAAAAAAGACTTGAAAAAATTTTCCTCAATTTTTAGCCACAATACTCAT
129 CTAAAATTTTGC----AAAAAAAGACCTG--AAAATTTTCCTCAATTTTTAGCCAAAATACTCAT
* * * *
40068 AAAAAATATATAATTAAAAGCCAAAAAAATTGTAATGCTTTTCACGCTTCTAATATCGTTTTTCA
188 AAAAAATATATAATTAACA-CCAAAAAAATTGTAAGGCTTTTCACGCTTTTAATATCATTTTTCA
* * * *
40133 TATTTTTTATGAATTAATTTTTAATTAAATCGAAACAGGATTTAGATACTCGTAAAAACAAATCC
252 TATTTTTTATGAATTAATTTCTAATTAAATCAAAACAAGATTTAGATGCTCGTAAAAACAAATCC
* *
40198 TTAAATGTAATT
317 TTAAATGCAATG
* *
40210 TGGCTAA-ATTTTTATTAGATGAATATAGATATTTCAAGGAGTGTCGACGCCAAATACCATGCAA
1 TGGCTAAGA-TTTTATTAGATGAATATAGATATTTCAAGGAGTGTCGGCGCCAAAAACCATGCAA
* * *
40274 AACTGAGCC-TGGGCCCTGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACGTGATCTTG
65 AACTGAGCCGT-GGCCC-AAAACGCGTTTTTAGCAAAAAACCGTGATGGTTAGTACATGATCTTG
* * **
40338 GCTAAAATTTTGCAAAAAATGACCTGAAAATTTT-CTCCAATTTTTGGATAAAATACTCATAAAA
128 GCTAAAATTTTGCAAAAAAAGACCTGAAAATTTTCCT-CAATTTTTAGCCAAAATACTCATAAAA
* *
40402 TATATATAATTTAACACCAAAAATATTG-AAGGACTTTTCACGCTTTTAATATCATTTTTCATA-
192 AATATATAA-TTAACACCAAAAAAATTGTAAGG-CTTTTCACGCTTTTAATATCATTTTTCATAT
* * * * * *
40465 TTTTTCTGAATTAATTTCTAATTAAATAAAAAAAAGATTCAGATGCTTGTAAAAACAAATTCTTA
255 TTTTTATGAATTAATTTCTAATTAAATCAAAACAAGATTTAGATGCTCGTAAAAACAAATCCTTA
*
40530 AATCCAATG
320 AATGCAATG
* * * * * * * *
40539 TGGCTGAGATTTGATTAGATGAATATGGATATCTCAAGGAGTCTTGGTGCCAAAAATCATGCAAA
1 TGGCTAAGATTTTATTAGATGAATATAGATATTTCAAGGAGTGTCGGCGCCAAAAACCATGCAAA
* * *
40604 ACTGAGCCGGGGCCCCAGAACGCTTTTTTTA-C-----A-C--GA----T--T---T-A---T-G
66 ACTGAGCCGTGG-CCCAAAACGC-GTTTTTAGCAAAAAACCGTGATGGTTAGTACATGATCTTGG
* ** * ** * * * **
40646 CTAAAATTTTGTAAAAATTGACCAGAAAGATATTTTTTTCAATTTTTGGCTAAAGTTGTCATAAA
129 CTAAAATTTTGCAAAAAAAGACCTG-AA-A-ATTTTCCTCAATTTTTAGCCAAAATACTCATAAA
* * * * * *
40711 AAATATATAATTCAACGCTAAAAAGATTG-AGGGCTTTTGACG-TTTCTAATATCATTTTTCCTA
191 AAATATATAATT-AACACCAAAAAAATTGTAAGGCTTTTCACGCTTT-TAATATCATTTTTCATA
*** ** * * * * *
40774 TTTTTTCCAAATTTGTTTTTAATTAAATCGAAACAATATTCATATGCTCGTAAAAACAAATCCTT
254 TTTTTTATGAATTAATTTCTAATTAAATCAAAACAAGATTTAGATGCTCGTAAAAACAAATCCTT
*
40839 AAATCCAATG
319 AAATGCAATG
* * * * * * *
40849 TGGCTAAGATTTGATTAGATGAATATAGATATATC-AGGTAGTCTCAGAGCCAAAAATCATTCAA
1 TGGCTAAGATTTTATTAGATGAATATAGATATTTCAAGG-AGTGTCGGCGCCAAAAACCATGCAA
* * ** * *
40913 AATTGAGCTG-GGTCCCCGGAACGCGTTTTTAGCCAAAAACCGTGATGATTTGTTAGTACACGAT
65 AACTGAGCCGTGG--CCCAAAACGCGTTTTTAGCAAAAAACCGTGATG----GTTAGTACATGAT
40977 -TTCGGCTAAAATTTTGCAAA
124 CTT-GGCTAAAATTTTGCAAA
40997 CATTAACACA
Statistics
Matches: 933, Mismatches: 130, Indels: 117
0.79 0.11 0.10
Matches are distributed among these distances:
307 23 0.02
308 6 0.01
309 38 0.04
310 186 0.20
311 2 0.00
312 1 0.00
315 2 0.00
316 1 0.00
317 1 0.00
318 2 0.00
321 2 0.00
323 1 0.00
324 1 0.00
326 1 0.00
328 1 0.00
329 135 0.14
330 88 0.09
331 5 0.01
332 12 0.01
333 61 0.07
334 51 0.05
335 8 0.01
336 234 0.25
337 30 0.03
338 36 0.04
339 2 0.00
340 3 0.00
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.34
Consensus pattern (328 bp):
TGGCTAAGATTTTATTAGATGAATATAGATATTTCAAGGAGTGTCGGCGCCAAAAACCATGCAAA
ACTGAGCCGTGGCCCAAAACGCGTTTTTAGCAAAAAACCGTGATGGTTAGTACATGATCTTGGCT
AAAATTTTGCAAAAAAAGACCTGAAAATTTTCCTCAATTTTTAGCCAAAATACTCATAAAAAATA
TATAATTAACACCAAAAAAATTGTAAGGCTTTTCACGCTTTTAATATCATTTTTCATATTTTTTA
TGAATTAATTTCTAATTAAATCAAAACAAGATTTAGATGCTCGTAAAAACAAATCCTTAAATGCA
ATG
Found at i:41111 original size:87 final size:87
Alignment explanation
Indices: 40965--41138 Score: 348
Period size: 87 Copynumber: 2.0 Consensus size: 87
40955 TGATGATTTG
40965 TTAGTACACGATTTCGGCTAAAATTTTGCAAACATTAACACAAAAGATTTCCCTCAATTTTTGGC
1 TTAGTACACGATTTCGGCTAAAATTTTGCAAACATTAACACAAAAGATTTCCCTCAATTTTTGGC
41030 TAAAATAATCATAACAATATAT
66 TAAAATAATCATAACAATATAT
41052 TTAGTACACGATTTCGGCTAAAATTTTGCAAACATTAACACAAAAGATTTCCCTCAATTTTTGGC
1 TTAGTACACGATTTCGGCTAAAATTTTGCAAACATTAACACAAAAGATTTCCCTCAATTTTTGGC
41117 TAAAATAATCATAACAATATAT
66 TAAAATAATCATAACAATATAT
41139 AATTTAATGC
Statistics
Matches: 87, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
87 87 1.00
ACGTcount: A:0.40, C:0.17, G:0.09, T:0.33
Consensus pattern (87 bp):
TTAGTACACGATTTCGGCTAAAATTTTGCAAACATTAACACAAAAGATTTCCCTCAATTTTTGGC
TAAAATAATCATAACAATATAT
Found at i:41960 original size:119 final size:118
Alignment explanation
Indices: 41752--42111 Score: 584
Period size: 118 Copynumber: 3.1 Consensus size: 118
41742 TTTACAATAT
* * * *
41752 CTTT-CCATAA-TCAATAAAAAA-TTGAGTTAATCATTTTAAAAACTAAAAAATTTAAATGACTA
1 CTTTCCCATAATTC-ATAAAAAAGTTGAATTAATCATTTAAAAAAATAAAAAAGTTAAATGACTA
41814 AAAAGAA-ACTTATTAAAAAATTATTATACTATAATACTAAGGGTATTTATGAA
65 AAAAGAATACTTATTAAAAAATTATTATACTATAATACTAAGGGTATTTATGAA
41867 CTTTCCCATAATTCATAAAAAAGTTGAATTAATCATTTAAAAAAAATAAAAAAGTTAAATGACTA
1 CTTTCCCATAATTCATAAAAAAGTTGAATTAATCATTT-AAAAAAATAAAAAAGTTAAATGACTA
* *
41932 AATAGAATACTTATTAAAAAAGTATTATACTATAATACTAAGGGTATTTATGAA
65 AAAAGAATACTTATTAAAAAATTATTATACTATAATACTAAGGGTATTTATGAA
* *
41986 CTTTCCCATAATTAATAATAAAGTTGAATTAATCATTTAAAAAAATAAAAAAGTTAAATGACTAA
1 CTTTCCCATAATTCATAAAAAAGTTGAATTAATCATTTAAAAAAATAAAAAAGTTAAATGACTAA
* *
42051 AAAGAATACTTATTAGAAAATTATTATATTATAATACTAAGGGTATTTATGAA
66 AAAGAATACTTATTAAAAAATTATTATACTATAATACTAAGGGTATTTATGAA
42104 CTTTCCCA
1 CTTTCCCA
42112 ATTAGAATTT
Statistics
Matches: 228, Mismatches: 12, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
115 4 0.02
116 14 0.06
117 16 0.07
118 113 0.50
119 81 0.36
ACGTcount: A:0.49, C:0.09, G:0.08, T:0.34
Consensus pattern (118 bp):
CTTTCCCATAATTCATAAAAAAGTTGAATTAATCATTTAAAAAAATAAAAAAGTTAAATGACTAA
AAAGAATACTTATTAAAAAATTATTATACTATAATACTAAGGGTATTTATGAA
Found at i:42157 original size:8 final size:8
Alignment explanation
Indices: 42144--42255 Score: 116
Period size: 8 Copynumber: 14.9 Consensus size: 8
42134 TTTTATATAG
42144 TAGTAAGA
1 TAGTAAGA
42152 TAGTAAGA
1 TAGTAAGA
42160 TAGTAAGA
1 TAGTAAGA
42168 TAGTAAGA
1 TAGTAAGA
42176 TAGTAA-A
1 TAGTAAGA
42183 -A-TAAGA
1 TAGTAAGA
42189 TAGTAAG-
1 TAGTAAGA
42196 -A-TAAGA
1 TAGTAAGA
42202 TAGTAAG-
1 TAGTAAGA
42209 -A-TAAGA
1 TAGTAAGA
*
42215 TAATAAGA
1 TAGTAAGA
* *
42223 TGGTAAAA
1 TAGTAAGA
42231 TAGTAAGA
1 TAGTAAGA
42239 TAAGATAAGA
1 T-AG-TAAGA
42249 TAGTAAG
1 TAGTAAG
42256 GTTAAAAGGC
Statistics
Matches: 88, Mismatches: 5, Indels: 22
0.77 0.04 0.19
Matches are distributed among these distances:
5 11 0.12
6 4 0.05
7 4 0.05
8 59 0.67
9 4 0.05
10 6 0.07
ACGTcount: A:0.54, C:0.00, G:0.22, T:0.24
Consensus pattern (8 bp):
TAGTAAGA
Found at i:42189 original size:21 final size:21
Alignment explanation
Indices: 42155--42245 Score: 98
Period size: 21 Copynumber: 4.3 Consensus size: 21
42145 AGTAAGATAG
42155 TAAGATAGTAAGATAGTAAGA
1 TAAGATAGTAAGATAGTAAGA
* *
42176 T-AGTAAAATAAGATAGTAAGA
1 TAAG-ATAGTAAGATAGTAAGA
42197 TAAGATAGTAAGATAAG-ATA-A
1 TAAGATAGTAAGAT-AGTA-AGA
* *
42218 TAAGATGGTAAAATAGTAAGA
1 TAAGATAGTAAGATAGTAAGA
42239 TAAGATA
1 TAAGATA
42246 AGATAGTAAG
Statistics
Matches: 57, Mismatches: 7, Indels: 12
0.75 0.09 0.16
Matches are distributed among these distances:
20 5 0.09
21 47 0.82
22 5 0.09
ACGTcount: A:0.55, C:0.00, G:0.21, T:0.24
Consensus pattern (21 bp):
TAAGATAGTAAGATAGTAAGA
Found at i:42221 original size:13 final size:13
Alignment explanation
Indices: 42155--42245 Score: 101
Period size: 13 Copynumber: 6.5 Consensus size: 13
42145 AGTAAGATAG
42155 TAAGATAGTAAGATA
1 TAAGATAGTAAG--A
*
42170 GTAAGATAGTAAAA
1 -TAAGATAGTAAGA
42184 TAAGATAGTAAGA
1 TAAGATAGTAAGA
42197 TAAGATAGTAAGA
1 TAAGATAGTAAGA
*
42210 TAAGATAATAAGA
1 TAAGATAGTAAGA
*
42223 TGGTAAAATAGTAAGA
1 ---TAAGATAGTAAGA
42239 TAAGATA
1 TAAGATA
42246 AGATAGTAAG
Statistics
Matches: 66, Mismatches: 6, Indels: 9
0.81 0.07 0.11
Matches are distributed among these distances:
13 43 0.65
14 1 0.02
16 22 0.33
ACGTcount: A:0.55, C:0.00, G:0.21, T:0.24
Consensus pattern (13 bp):
TAAGATAGTAAGA
Found at i:42243 original size:34 final size:34
Alignment explanation
Indices: 42147--42255 Score: 115
Period size: 34 Copynumber: 3.4 Consensus size: 34
42137 TATATAGTAG
*
42147 TAAGATAGTAAGATAGTAAGATAGTAAGAT-AG-
1 TAAGATAATAAGATAGTAAGATAGTAAGATAAGA
42179 T-A-A-AATAAGATAGTAAGATAAG-ATAG-TAAGA
1 TAAGATAATAAGATAGTAAGAT-AGTA-AGATAAGA
* *
42210 TAAGATAATAAGATGGTAAAATAGTAAGATAAGA
1 TAAGATAATAAGATAGTAAGATAGTAAGATAAGA
*
42244 TAAGATAGTAAG
1 TAAGATAATAAG
42256 GTTAAAAGGC
Statistics
Matches: 64, Mismatches: 4, Indels: 16
0.76 0.05 0.19
Matches are distributed among these distances:
29 17 0.27
30 7 0.11
31 2 0.03
32 2 0.03
33 5 0.08
34 31 0.48
ACGTcount: A:0.54, C:0.00, G:0.22, T:0.24
Consensus pattern (34 bp):
TAAGATAATAAGATAGTAAGATAGTAAGATAAGA
Found at i:48209 original size:23 final size:22
Alignment explanation
Indices: 48183--48225 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
48173 TTTTATGACC
*
48183 TCCTCATAAAATTTTAATAACCT
1 TCCT-ATAAAACTTTAATAACCT
*
48206 TCCTATGAAACTTTAATAAC
1 TCCTATAAAACTTTAATAAC
48226 GATACTATTG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.40, C:0.21, G:0.02, T:0.37
Consensus pattern (22 bp):
TCCTATAAAACTTTAATAACCT
Found at i:48282 original size:22 final size:20
Alignment explanation
Indices: 48248--48290 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 20
48238 TTTCGAGAAT
*
48248 CCTTTTATAAATTTTTTTAA
1 CCTTTTATAAATTTTGTTAA
48268 CCTTCTTATGAAATTTTGTTAA
1 CCTT-TTAT-AAATTTTGTTAA
48290 C
1 C
48291 TTCCTTAAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 4 0.20
21 4 0.20
22 12 0.60
ACGTcount: A:0.28, C:0.14, G:0.05, T:0.53
Consensus pattern (20 bp):
CCTTTTATAAATTTTGTTAA
Found at i:48623 original size:44 final size:43
Alignment explanation
Indices: 48453--48721 Score: 155
Period size: 44 Copynumber: 6.3 Consensus size: 43
48443 AATCACACTC
* * * * * * *
48453 TGAAATTTTGATAATCACACTATAAAATTGTGATAACCTCGCTA
1 TGAAATTTTGATAACCTCATTATGAAATTTTGA-AATCTCCCTA
* * ** * * * *
48497 TAAAATTTTAATAAACCTCCCTATAAAATTTTAATAACCTCCTTA
1 TGAAATTTTGAT-AACCTCATTATGAAATTTTGA-AATCTCCCTA
* *
48542 TGAAATCTTGATAA---C--TAT-AAATTTTGATAACCTCCCTA
1 TGAAATTTTGATAACCTCATTATGAAATTTTGA-AATCTCCCTA
**
48580 TGATTTTTTGATAACCTCATTATGAAATTTTGTAAATCTCCCTA
1 TGAAATTTTGATAACCTCATTATGAAATTTTG-AAATCTCCCTA
* **
48624 TGAAATTTTGATAACC-CTTTTATGAAATTTTGAAAAT-TAAACTA
1 TGAAATTTTGATAACCTC-ATTATGAAATTTTG-AAATCT-CCCTA
* *
48668 TGAAATTTTGATAACCTTCA-TATGAAATTTTGATATC-CTC-A
1 TGAAATTTTGATAACC-TCATTATGAAATTTTGAAATCTCCCTA
48709 TTGAAATTTTGAT
1 -TGAAATTTTGAT
48722 TACCCCATAG
Statistics
Matches: 183, Mismatches: 28, Indels: 30
0.76 0.12 0.12
Matches are distributed among these distances:
38 29 0.16
39 3 0.02
41 3 0.02
42 13 0.07
43 8 0.04
44 91 0.50
45 35 0.19
46 1 0.01
ACGTcount: A:0.37, C:0.15, G:0.08, T:0.40
Consensus pattern (43 bp):
TGAAATTTTGATAACCTCATTATGAAATTTTGAAATCTCCCTA
Found at i:48715 original size:20 final size:22
Alignment explanation
Indices: 48256--48721 Score: 136
Period size: 22 Copynumber: 21.5 Consensus size: 22
48246 ATCCTTTTAT
** *
48256 AAATTTTTTTAACCTTCTTATG
1 AAATTTTGATAACCTTCATATG
* * *
48278 AAATTTTGTTAA-CTTCCTTAAG
1 AAATTTTGATAACCTT-CATATG
*
48300 GAATTTTGA-AGACC-TCACTATG
1 AAATTTTGATA-ACCTTCA-TATG
48322 AAATTTTGATAA-CTTCCGA-ATG
1 AAATTTTGATAACCTT-C-ATATG
** *
48344 AAATTTTGATAACCAACACTTTG
1 AAATTTTGATAACCTTCA-TATG
* ** * *
48367 AGACGTTAATAACCTCCATAT-
1 AAATTTTGATAACCTTCATATG
* * *
48388 AATATATTGATAACC-ACGTTATG
1 AA-ATTTTGATAACCTTC-ATATG
* * * *
48411 AAAATTTAAAAACCTCCATATG
1 AAATTTTGATAACCTTCATATG
* * *
48433 -AATTGTT-AGTAATC-ACACTCTG
1 AAATT-TTGA-TAACCTTCA-TATG
* * *
48455 AAATTTTGATAATC-ACACTATA
1 AAATTTTGATAACCTTCA-TATG
* * *
48477 AAATTGTGATAACC-TCGCTATA
1 AAATTTTGATAACCTTC-ATATG
* * * *
48499 AAATTTTAATAAACCTCCCTATA
1 AAATTTTGAT-AACCTTCATATG
* * *
48522 AAATTTTAATAACCTCCTTATG
1 AAATTTTGATAACCTTCATATG
*
48544 AAATCTTGATAA----C-TAT-
1 AAATTTTGATAACCTTCATATG
* *
48560 AAATTTTGATAACCTCCCTATG
1 AAATTTTGATAACCTTCATATG
**
48582 ATTTTTTGATAACC-TCATTATG
1 AAATTTTGATAACCTTCA-TATG
* * *
48604 AAATTTTG-TAAATCTCCCTATG
1 AAATTTTGAT-AACCTTCATATG
*
48626 AAATTTTGATAACCCTT-TTATG
1 AAATTTTGATAA-CCTTCATATG
* *
48648 AAATTTTGA-AA-ATTAAACTATG
1 AAATTTTGATAACCTT-CA-TATG
48670 AAATTTTGATAACCTTCATATG
1 AAATTTTGATAACCTTCATATG
*
48692 AAATTTTGATATCC-TCAT-TG
1 AAATTTTGATAACCTTCATATG
48712 AAATTTTGAT
1 AAATTTTGAT
48722 TACCCCATAG
Statistics
Matches: 340, Mismatches: 65, Indels: 80
0.70 0.13 0.16
Matches are distributed among these distances:
16 11 0.03
17 3 0.01
18 1 0.00
19 2 0.01
20 13 0.04
21 26 0.08
22 228 0.67
23 52 0.15
24 4 0.01
ACGTcount: A:0.37, C:0.16, G:0.09, T:0.39
Consensus pattern (22 bp):
AAATTTTGATAACCTTCATATG
Found at i:48879 original size:22 final size:22
Alignment explanation
Indices: 48831--48882 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
48821 ATCACATTTT
* *
48831 TAAAA-TTTGATAACCTCTTTA
1 TAAAATTTTAATAACCTCTCTA
* *
48852 TGAAATTTTAATAACTTCTCTA
1 TAAAATTTTAATAACCTCTCTA
48874 TAAAATTTT
1 TAAAATTTT
48883 GTTGACCCCT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
21 4 0.16
22 21 0.84
ACGTcount: A:0.38, C:0.12, G:0.04, T:0.46
Consensus pattern (22 bp):
TAAAATTTTAATAACCTCTCTA
Found at i:48919 original size:66 final size:66
Alignment explanation
Indices: 48849--48974 Score: 153
Period size: 66 Copynumber: 1.9 Consensus size: 66
48839 GATAACCTCT
* * * * ** *
48849 TTATGAAATTTTAATAACTTCTCTATAAAATTTTGTTGACCCCTCTATGAAATTTTGATATTTTC
1 TTATGAAATTTTAATAACCTCGCTATAAAATTTTGATAACAACACTATGAAATTTTGATATTTTC
48914 A
66 A
* * * *
48915 TTATGTAATTTTGATAACCTCGCTTTGAAATTTTGATAACAACACTATGAAATTTTGATA
1 TTATGAAATTTTAATAACCTCGCTATAAAATTTTGATAACAACACTATGAAATTTTGATA
48975 ATGTTTGGGG
Statistics
Matches: 49, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
66 49 1.00
ACGTcount: A:0.33, C:0.13, G:0.10, T:0.44
Consensus pattern (66 bp):
TTATGAAATTTTAATAACCTCGCTATAAAATTTTGATAACAACACTATGAAATTTTGATATTTTC
A
Found at i:48946 original size:22 final size:22
Alignment explanation
Indices: 48916--48975 Score: 75
Period size: 22 Copynumber: 2.7 Consensus size: 22
48906 ATATTTTCAT
* ** *
48916 TATGTAATTTTGATAACCTCGC
1 TATGAAATTTTGATAACAACAC
*
48938 TTTGAAATTTTGATAACAACAC
1 TATGAAATTTTGATAACAACAC
48960 TATGAAATTTTGATAA
1 TATGAAATTTTGATAA
48976 TGTTTGGGGT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.40
Consensus pattern (22 bp):
TATGAAATTTTGATAACAACAC
Found at i:48969 original size:44 final size:43
Alignment explanation
Indices: 48836--48975 Score: 129
Period size: 44 Copynumber: 3.2 Consensus size: 43
48826 ATTTTTAAAA
* * * *
48836 TTTGATAACCTCTTTATGAAATTTTAATAACTTCTCTATAAAAT
1 TTTGATAACCTCCTT-TGAAATTTTGATAACTTCACTATGAAAT
* * ** * *
48880 TTTGTTGACC-CCTCTATGAAATTTTGATATTTTCATTATGTAAT
1 TTTGATAACCTCCT-T-TGAAATTTTGATAACTTCACTATGAAAT
**
48924 TTTGATAACCTCGCTTTGAAATTTTGATAACAACACTATGAAAT
1 TTTGATAACCTC-CTTTGAAATTTTGATAACTTCACTATGAAAT
48968 TTTGATAA
1 TTTGATAA
48976 TGTTTGGGGT
Statistics
Matches: 75, Mismatches: 18, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
43 2 0.03
44 69 0.92
45 2 0.03
46 2 0.03
ACGTcount: A:0.33, C:0.14, G:0.09, T:0.44
Consensus pattern (43 bp):
TTTGATAACCTCCTTTGAAATTTTGATAACTTCACTATGAAAT
Found at i:52367 original size:322 final size:317
Alignment explanation
Indices: 51722--52895 Score: 1011
Period size: 322 Copynumber: 3.6 Consensus size: 317
51712 ACTGGCTTTA
* * ** *
51722 CGCCAAAAATCATGCAAAACTGAGTCGGGGCCCC-AGAAGGCGTTTTAAGCAAAAAAAATCGTGA
1 CGCCAAAAATCATGCAAAACTGAG-CGGGGCCCCGA-AACGCGTTTTTAGC-TCAAAAACCGTGA
* * *
51786 TGGTTAGTACATGATTCCGGCTAAAATTTTGCAAAAACTGACCCGAAATTTTTTTCCTCAATTCT
63 TGGTTAGTACATAATTTCGG--------TT--AAAAACTGACCCGAAATTTTTTT-CTCAATTTT
* * * * * *
51851 TTGCCACAATACTTAGGAAAAATATATAATTCATCGCAAAAAAAAACTTGAAGGGTTTTTCACGT
117 TTGCCACAATACTCAGAAAAAATATATAATTCAACGCAAAAAAAAACTTGAAGGGCTTTTCAAGC
* *
51916 TTCTAATATTGTCTT--TTTTTTCCCGGAATTTATTTCTAATTAAAACGAAACAAGATTCAGATG
182 TTCTAATATCGT-TTCATTTTTT--C-GAATTTATTTCTAATTAAATCGAAACAAGATTCAGATG
* * * * *
51979 CTCGTAAAAATAAATCCTTAAAACTGATGTGGCTGAGATATGGTTAGATGAATATAGATATTTCA
243 CTTGTAAAAACAAATCCTTAAATCTAATGTGGCTGGGATATGGTTAGATGAATATAGATATTTCA
52044 AGGAGTTTTT
308 AGGAGTTTTT
* *
52054 CTGCCAAAAATCATGCAAAACTGAGTCGGGGCCCCGAAACGTGTTTTTAGCTCGAAAACCGTGAT
1 C-GCCAAAAATCATGCAAAACTGAG-CGGGGCCCCGAAACGCGTTTTTAGCTCAAAAACCGTGAT
* * * * *
52119 GGTTAGTGCATGATTTCGGTTAAAAACTGACCCGAAATTTTTTTATGAATTTTTTGCCACAATAT
64 GGTTAGTACATAATTTCGGTTAAAAACTGACCCGAAATTTTTTTCTCAATTTTTTGCCACAATAC
* * * *
52184 TCAGAAAAAATATATAATTCAACGC-CAAAAAGA-TTGACGGGCTTTTCATGCTTCTAATATCGT
129 TCAGAAAAAATATATAATTCAACGCAAAAAAAAACTTGAAGGGCTTTTCAAGCTTCTAATATCGT
* * * *
52247 TTCACCATTTTTTCTGAATTAATTTCTAATTAAATCAAAACAATATTCAGATGCTTGTTAGAAA-
194 TT---CATTTTTTC-GAATTTATTTCTAATTAAATCGAAACAAGATTCAGATGCTTG-TAAAAAC
* * * * * * *
52311 AAATCCCTTATATCCAATGTGGCTGGGATTTGATTCGATGAATATAGATGTTTCAAGAAGTCTTT
254 AAAT-CCTTAAATCTAATGTGGCTGGGATATGGTTAGATGAATATAGATATTTCAAGGAGT-TTT
*
52376 G
317 T
* * * * * ** *
52377 CGCCAAATATCATGAAAAATTGAGCTGGGGCCCCGGAACGCCTTTTTAGCAAAAAAACTGTGATG
1 CGCCAAAAATCATGCAAAACTGAGC-GGGGCCCCGAAACGCGTTTTTAGCTCAAAAACCGTGATG
** * *** *
52442 GTTAGTACACCATTTCGGCTAAAATTTTGCAAAATCTGTTACGAAATTTTTTCCTCAATTTTTTG
65 GTTAGTACATAATTTCGG--------TT--AAAAACTGACCCGAAATTTTTTTCTCAATTTTTTG
* * * * * *
52507 CCACAATACTCA-AAAAATATATATAACTGAATGC-CAAAAAAATTTGAAGGGGTTTTCAAGCTT
120 CCACAATACTCAGAAAAA-ATATATAATTCAACGCAAAAAAAAACTTGAAGGGCTTTTCAAGCTT
*
52570 CTAATATCGTTTTTTCATTTTTTCGAATTTATTTCCT-ATTAAATCGAAACAAGATTCAAATGCT
184 CTAATATCG---TTTCATTTTTTCGAATTTATTT-CTAATTAAATCGAAACAAGATTCAGATGCT
** * ** *
52634 CATACAAACAAATGTTTAAATCTAATGTGGCTGAGG-TATGGTTAGATGAAGATAGATATTTCAA
245 TGTAAAAACAAATCCTTAAATCTAATGTGGCTG-GGATATGGTTAGATGAATATAGATATTTCAA
*
52698 GGAGTCTTTC
309 GGAGT-TTTT
** *
52708 CGCCAAAAATCATGCAAAACTGAGGCGGGGCCATGAAACGCGTTTTTATCTCAAAAACCGTGATG
1 CGCCAAAAATCATGCAAAACTGA-GCGGGGCCCCGAAACGCGTTTTTAGCTCAAAAACCGTGATG
* * * ** ** * * *
52773 GTTAGTACATAATTTCAGCTAAAAGCTGACCTAAAAAATTTTTCTGAATTTTTTGCAATAATACT
65 GTTAGTACATAATTTCGGTTAAAAACTGACCCGAAATTTTTTTCTCAATTTTTTGCCACAATACT
* * * * ** *
52838 AAGAATAAATATATAATTCAATGCAAAAAAAGA-TTGACTGGCTTTTTCAAGCATCTAA
130 CAGAAAAAATATATAATTCAACGCAAAAAAAAACTTGAAGGGC-TTTTCAAGCTTCTAA
52896 ATTCTTATGC
Statistics
Matches: 685, Mismatches: 124, Indels: 76
0.77 0.14 0.09
Matches are distributed among these distances:
318 2 0.00
319 25 0.04
320 6 0.01
321 136 0.20
322 165 0.24
323 11 0.02
324 2 0.00
330 2 0.00
331 123 0.18
332 128 0.19
333 81 0.12
334 1 0.00
336 3 0.00
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33
Consensus pattern (317 bp):
CGCCAAAAATCATGCAAAACTGAGCGGGGCCCCGAAACGCGTTTTTAGCTCAAAAACCGTGATGG
TTAGTACATAATTTCGGTTAAAAACTGACCCGAAATTTTTTTCTCAATTTTTTGCCACAATACTC
AGAAAAAATATATAATTCAACGCAAAAAAAAACTTGAAGGGCTTTTCAAGCTTCTAATATCGTTT
CATTTTTTCGAATTTATTTCTAATTAAATCGAAACAAGATTCAGATGCTTGTAAAAACAAATCCT
TAAATCTAATGTGGCTGGGATATGGTTAGATGAATATAGATATTTCAAGGAGTTTTT
Found at i:53533 original size:335 final size:329
Alignment explanation
Indices: 52905--53646 Score: 926
Period size: 335 Copynumber: 2.2 Consensus size: 329
52895 AATTCTTATG
* * ***
52905 CAATGTGGCTGAGATTTGATTCGATGAATATAGATATTTCAAGGAGTCTTTGCACCAAAAATC-T
1 CAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTATGCCAAAAATCAT
* * * * *
52969 AGCAAAATTCAGCCGGGCTCCGGAATGCGTTTTTAGCAAAAAACCGTGATGGGTACACGAGTTCG
66 A-CAAAACTGAGCCGGGCTCCGAAACGCATTTTTAGCAAAAAACCGTGATGGGTACACGAGTTCG
* * * *
53034 GCTAAAATTTAGCAAAAACTTACCCGAAAAGTTTTTCCTCAATTTTTTGCCCCAAAACTCAGAAA
130 GCTAAAATTTAGCAAAAACTGACCCGAAAAATTTGTCCTCAATTTTTTGCCACAAAACTCAG-AA
* * *
53099 AAAAGTATATAATTCAACGCCAAAAAAATTGAAGGGTTTTTTCACGCTTCTAATATCGTTTTTCC
194 AAAAGTATATAATTCAACGCAAAAAAAATTGAAGAGTTTTTTCACGCTTCTAATATCATTTTTCC
* * **
53164 ATTTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATACAGATGCTCGTAAAATTGCATCCT
259 ATTTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATACAAATGCTCGTAAAAATAAATCCT
53229 TAAATC
324 TAAATC
* *
53235 CAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTATGCTAAAAACCAT
1 CAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTATGCCAAAAATCAT
* * * * * *
53300 ACAATACTGAGTCGAGGC-CCTGAAACGCATTTTTAGCTAAAAACCGTGATGGTTAAGACCCGAT
66 ACAAAACTGAGCCG-GGCTCC-GAAACGCATTTTTAGCAAAAAACCGTGATGGGT---ACACGAG
* *
53364 TTCGGCTAAAATTTTGCAAAAACTGACCC-ACAAAATTTGTCCTCAATTTTTTTGCCACAATACT
126 TTCGGCTAAAATTTAGCAAAAACTGACCCGA-AAAATTTGTCCTCAA-TTTTTTGCCACAAAACT
*
53428 CAG-AAAAA-TATATAATTCAATGCAAAAAAAAAAATT-AAGAG-TTTTTCACGCTTCTAATATC
189 CAGAAAAAAGTATATAATTCAACGC---AAAAAAAATTGAAGAGTTTTTTCACGCTTCTAATATC
* *
53489 ATTTTTCCGTTCTTTTTTTCC-AATTTA-TTCTAATTAAATCGAAACAAGATTCAAATGCTCGTA
251 ATTTTT-C---CATTTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATACAAATGCTCGTA
53552 AAAATAAATCCTTAAATC
312 AAAATAAATCCTTAAATC
* * * *
53570 CAATGTGGCTGAGATTTAGTTAAATGAATATAGATATTTCAAGAAGTCTTTCTGCCAAAAATCAT
1 CAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTATGCCAAAAATCAT
*
53635 GCAAAACTGAGC
66 ACAAAACTGAGC
53647 TGGAGTTTGA
Statistics
Matches: 354, Mismatches: 43, Indels: 25
0.84 0.10 0.06
Matches are distributed among these distances:
330 67 0.19
331 33 0.09
332 14 0.04
333 31 0.09
334 50 0.14
335 144 0.41
336 6 0.02
337 9 0.03
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.32
Consensus pattern (329 bp):
CAATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTATGCCAAAAATCAT
ACAAAACTGAGCCGGGCTCCGAAACGCATTTTTAGCAAAAAACCGTGATGGGTACACGAGTTCGG
CTAAAATTTAGCAAAAACTGACCCGAAAAATTTGTCCTCAATTTTTTGCCACAAAACTCAGAAAA
AAGTATATAATTCAACGCAAAAAAAATTGAAGAGTTTTTTCACGCTTCTAATATCATTTTTCCAT
TTTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATACAAATGCTCGTAAAAATAAATCCTTA
AATC
Found at i:55383 original size:333 final size:317
Alignment explanation
Indices: 54350--55800 Score: 1330
Period size: 333 Copynumber: 4.4 Consensus size: 317
54340 ATAGGGGGAG
* * * * * *
54350 TAATTTTTAATTAAATCCAAACAAGATTCTGATGCCCGTAAAAACAAATCCTTATATCCAATGTG
1 TAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCATA-ATCAAATGTG
* * * * * *
54415 GCTGATATTTGGTTCGCTGAAGATAGATATTTCAAGGATTTTTTACGTCAAAAATCATGCAAAAT
65 GCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTACGCCAAAAATCATGCAAAAT
* ** * *** *
54480 TGAGTTGAAGCACCAG-AACGCGTTTTTAGCAAAAAACCGTGATGATTAGTATATGATTTCGGCT
130 TGAGTCGGGGC-CCAGAAACGCGTTTTTAGCAAAAAACCGTGATGGTTAGCCCA--ATTTTGGC-
* ** * *
54544 AAAATTTTTCAAAAACTGACCCGAAAAGTTTTTCCTCAATCTCATGCCACAATACTTAG-AAAAA
191 --------T-AAAAACTGACCCG-AAAGTTTTTCCTCAATTTTTTGCCATAATACTCAGAAAAAA
* *
54608 TATATAATTCAACGCCAAAATAA-ATTGAAAGG-TTTTTCACGCTTCTAATATCATTTTTCCAAT
246 TATATAATTCAATGCCAAAA-AAGA-TG-AAGGATTTTTCACGCTTCTAATATCA-TTTTCCATT
* *
54671 TTTTTCAGATT
307 TTTTTCCGAAT
* * * * *
54682 TTATATCTAATTAAATCGAAACAAGATTCATATGCTTCGTAAAAACAAATCCGTAAATCCAATGT
1 TAATTTCTAATTAAATCGAAACAAGATTCAGATGC-TCGTAAAAACAAATCCAT-AATCAAATGT
* * *
54747 GGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTT-CTCAAAAAAATCATGCAAA
64 GGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTACGC-CAAAAATCATGCAAA
* * * * * * ** ** * *
54811 ACTGAGCCGGAGCTCTGAAATGCGTTTTTAGCCCGAAAACCGTGATGGTTAGTAAACGATTTCGG
128 ATTGAGTCGGGGCCCAGAAACGCGTTTTTAG-CAAAAAACCGTGATGGTTAG--CCCAATTTTGG
* * *
54876 CTAAAAACTGACCCGAAAGTTTTTTCTTAAATTTTTTGCCATAATACTCAGAAAAAAAAAATATA
190 CTAAAAACTGACCCGAAAG-TTTTTCCTCAATTTTTTGCCATAATACTCAG--AAAAAATATATA
* * * *
54941 ATTTAACT-CC-AAAAAGATTGACGG-TCTTTCCACGCTTCTAATATCGTTTTTCCATTTTTTTC
252 ATTCAA-TGCCAAAAAAGA-TGAAGGAT-TTTTCACGCTTCTAATATC-ATTTTCCATTTTTTTC
55003 CGAAT
313 CGAAT
* * *
55008 TAATTTCTAATTAAATCGAAACAAGATTCAAATGCTCGTAAAAACAAATCCATACATCAAATTTC
1 TAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCATA-ATCAAATGTG
* * * * *
55073 ACTGAGATTTGGTTCGATGAATATTGATATTTTAAGGAGTCCTTGCGCCAAAAATCATGCAAAAT
65 GCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTACGCCAAAAATCATGCAAAAT
* *
55138 TGAGTCGGGGCTCCAG-AATGCGTTTTTAGTAAAAAACCGTGATGGTTTAGTACACGCTTTCAGG
130 TGAGTCGGGGC-CCAGAAACGCGTTTTTAGCAAAAAACCGTGATGG-TTAG----C-C---C---
* * * *
55202 TAAAATTTT-GC-AAAAACTGACTCGGAAAGTTTTTCCTCAATTTTTTACCATAGTACTCAGAAG
182 ---AATTTTGGCTAAAAACTGAC-CCGAAAGTTTTTCCTCAATTTTTTGCCATAATACTCAGAAA
*
55265 AAATATATAATTCCATGCCAAAAAAGATGAAGGATTTTTCACGCTTCTAATATCATTTT-CATTT
243 AAATATATAATTCAATGCCAAAAAAGATGAAGGATTTTTCACGCTTCTAATATCATTTTCCA-TT
*
55329 TTTTTTCGAAAT
307 TTTTTCCG-AAT
* * * *
55341 TTATTTCTAATTAAATCGAAACAAGAATCAGATGCTCGTAAAAACAAATCCTTAAATCCAATGTG
1 TAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCAT-AATCAAATGTG
* * * *
55406 GTTGTGATTTGGTTAGATGAATATAAGATATTTCAAGGAGTCTTTATGCCAAAAATCATGCAAAA
65 GCTGAGATTTGGTTCGATGAATAT-AGATATTTCAAGGAGTCTTTACGCCAAAAATCATGCAAAA
* * * *
55471 TTGAGTCGAGGCCCCGAAACGCGTTTTTAGCAATAAAGCGTGATGGTTAGCCCAATTTTGGCTAA
129 TTGAGTCGGGGCCCAGAAACGCGTTTTTAGCAAAAAACCGTGATGGTTAGCCCAATTTTGGCTAA
* * * * * * * *
55536 AAACTTACCCGAAAATTTTTTCTCAA-TATTTGCCACAATACTAATAAAAAATATATAATTCAAC
194 AAACTGACCCGAAAGTTTTTCCTCAATTTTTTGCCATAATACTCAGAAAAAATATATAATTCAAT
* * *
55600 GTCAAAAACA-TTGAAGGATTTTTTCACGCTTCTAATATCGTTTTCCAATTTTTTTCCGAAT
259 GCCAAAAA-AGATGAAGGA-TTTTTCACGCTTCTAATATCATTTTCC-ATTTTTTTCCGAAT
* *
55661 TAATTTGTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAAT-CATTGAATCGAATGT
1 TAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCA-T-AATCAAATGT
* * * * *
55725 GGCTGGGATTTGGTTCAATGAATATAGATATTTCAAGGGGTCTTTACGTCAAGAATCATGCAAAA
64 GGCTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTACGCCAAAAATCATGCAAAA
* *
55790 CTGAGTTGGGG
129 TTGAGTCGGGG
55801 TTAAAAACTG
Statistics
Matches: 930, Mismatches: 142, Indels: 107
0.79 0.12 0.09
Matches are distributed among these distances:
319 94 0.10
320 122 0.13
321 19 0.02
322 1 0.00
323 4 0.00
324 51 0.05
325 112 0.12
326 78 0.08
327 18 0.02
328 1 0.00
329 1 0.00
331 3 0.00
332 46 0.05
333 224 0.24
334 106 0.11
335 37 0.04
336 9 0.01
337 4 0.00
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.33
Consensus pattern (317 bp):
TAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCATAATCAAATGTGG
CTGAGATTTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTACGCCAAAAATCATGCAAAATT
GAGTCGGGGCCCAGAAACGCGTTTTTAGCAAAAAACCGTGATGGTTAGCCCAATTTTGGCTAAAA
ACTGACCCGAAAGTTTTTCCTCAATTTTTTGCCATAATACTCAGAAAAAATATATAATTCAATGC
CAAAAAAGATGAAGGATTTTTCACGCTTCTAATATCATTTTCCATTTTTTTCCGAAT
Found at i:60038 original size:1 final size:1
Alignment explanation
Indices: 60032--60059 Score: 56
Period size: 1 Copynumber: 28.0 Consensus size: 1
60022 CATAAATGAC
60032 TTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTT
60060 GCGTTTCATC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:62834 original size:36 final size:36
Alignment explanation
Indices: 62787--62856 Score: 104
Period size: 36 Copynumber: 1.9 Consensus size: 36
62777 TTCAATAATC
* * *
62787 TTACATCTTTTGTGATTTTGGTTATCATATTTCTTA
1 TTACATCTTTTGTAATTTTGATTACCATATTTCTTA
*
62823 TTACATTTTTTGTAATTTTGATTACCATATTTCT
1 TTACATCTTTTGTAATTTTGATTACCATATTTCT
62857 CCAAAATCTC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.21, C:0.11, G:0.09, T:0.59
Consensus pattern (36 bp):
TTACATCTTTTGTAATTTTGATTACCATATTTCTTA
Found at i:64890 original size:56 final size:55
Alignment explanation
Indices: 64803--64912 Score: 193
Period size: 56 Copynumber: 2.0 Consensus size: 55
64793 CTGTTTCCTC
64803 TCACACAATAAATGTTATAATAAATCCTATCCCCCTATCTCTACTTAATTATTCTT
1 TCACACAATAAATGTTATAATAAATCCTAT-CCCCTATCTCTACTTAATTATTCTT
**
64859 TCACACAATAAATGTTATAATAAATGTTATCCCCTATCTCTACTTAATTATTCT
1 TCACACAATAAATGTTATAATAAATCCTATCCCCTATCTCTACTTAATTATTCT
64913 ACAAAATAAA
Statistics
Matches: 52, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
55 24 0.46
56 28 0.54
ACGTcount: A:0.35, C:0.23, G:0.03, T:0.40
Consensus pattern (55 bp):
TCACACAATAAATGTTATAATAAATCCTATCCCCTATCTCTACTTAATTATTCTT
Found at i:64925 original size:56 final size:56
Alignment explanation
Indices: 64809--64918 Score: 161
Period size: 55 Copynumber: 2.0 Consensus size: 56
64799 CCTCTCACAC
* * *
64809 AATAAATGTTATAATAAATCCTATCCCCCTATCTCTACTTAATTATTCTTTCACAC
1 AATAAATGTTATAATAAATCCTATCCCCCTATCTCTACTTAATTATTCTTACAAAA
**
64865 AATAAATGTTATAATAAATGTTAT-CCCCTATCTCTACTTAATTATTC-TACAAAA
1 AATAAATGTTATAATAAATCCTATCCCCCTATCTCTACTTAATTATTCTTACAAAA
64919 TAAATAATAT
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
54 4 0.08
55 23 0.47
56 22 0.45
ACGTcount: A:0.37, C:0.21, G:0.03, T:0.39
Consensus pattern (56 bp):
AATAAATGTTATAATAAATCCTATCCCCCTATCTCTACTTAATTATTCTTACAAAA
Found at i:65043 original size:42 final size:42
Alignment explanation
Indices: 64979--65058 Score: 142
Period size: 42 Copynumber: 1.9 Consensus size: 42
64969 AAGGATCAGA
64979 ATTTGAGTTGAGTATTTCTTAATTTACAAAGAATTTTCTATG
1 ATTTGAGTTGAGTATTTCTTAATTTACAAAGAATTTTCTATG
* *
65021 ATTTGAGTTGAGTATTTTTTAATTTACAGAGAATTTTC
1 ATTTGAGTTGAGTATTTCTTAATTTACAAAGAATTTTC
65059 AAGACTTAGC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.30, C:0.06, G:0.15, T:0.49
Consensus pattern (42 bp):
ATTTGAGTTGAGTATTTCTTAATTTACAAAGAATTTTCTATG
Found at i:65829 original size:39 final size:40
Alignment explanation
Indices: 65775--65855 Score: 137
Period size: 39 Copynumber: 2.0 Consensus size: 40
65765 ATACCTAAGA
*
65775 ATTTAATTAATGTAAGTATTTCAGTTATTATA-GTATTAC
1 ATTTAATTAATGTAAGTATTTCAGTTATTATATATATTAC
*
65814 ATTTAATTAATGTAAGTATTTTAGTTATTATATATATTAC
1 ATTTAATTAATGTAAGTATTTCAGTTATTATATATATTAC
65854 AT
1 AT
65856 AGGAATTAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
39 31 0.79
40 8 0.21
ACGTcount: A:0.37, C:0.04, G:0.09, T:0.51
Consensus pattern (40 bp):
ATTTAATTAATGTAAGTATTTCAGTTATTATATATATTAC
Found at i:66077 original size:2 final size:2
Alignment explanation
Indices: 66065--66119 Score: 69
Period size: 2 Copynumber: 27.5 Consensus size: 2
66055 AGTTTAGACT
66065 TA TA TA GTA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TGA -A TA
1 TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA TA
*
66108 TT TA -A TA TA TA T
1 TA TA TA TA TA TA T
66120 CAATAAAATG
Statistics
Matches: 47, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
1 2 0.04
2 42 0.89
3 3 0.06
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (2 bp):
TA
Found at i:86757 original size:2 final size:2
Alignment explanation
Indices: 86750--86777 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
86740 GGTTACCATA
86750 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
86778 GAATTTGGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:93999 original size:123 final size:127
Alignment explanation
Indices: 93861--94115 Score: 394
Period size: 131 Copynumber: 2.0 Consensus size: 127
93851 CATTGTTTAA
* * *
93861 ACTTTTATAGTTTTACTCAACTAAAAACTCTATTTTTATTTAATTAAATCTAATAT-CTT-TA-T
1 ACTTTTACAGTTTTACTCAACTAAAAACTCAATTTTAATTTAATTAAATCTAATATCCTTATACT
93923 A-ATTTTTACCATTTTACTATTTTAATTAAAAAACTTATATATA-TCAGAATTTTTTAAATAT
66 ATATTTTTACCATTTTACTATTTTAATTAAAAAACTTATATATATTC-GAATTTTTTAAATAT
93984 ACTTTTACAGTTTTACTCAACTAAAAACTCAATTTTAATTTAATTAAATCTAATATCCTTATACC
1 ACTTTTACAGTTTTACTCAACTAAAAACTCAATTTTAATTTAATTAAATCTAATATCCTTATA-C
*
94049 TATTTTATTTTTACCATTTTATTATTTTAATTAAAAAACTTATATATATTCGAATTTTTTAAATA
65 TA---TATTTTTACCATTTTACTATTTTAATTAAAAAACTTATATATATTCGAATTTTTTAAATA
94114 T
127 T
94115 A
1 A
94116 TTTCTTAAAT
Statistics
Matches: 119, Mismatches: 4, Indels: 10
0.89 0.03 0.08
Matches are distributed among these distances:
123 53 0.45
124 3 0.03
125 2 0.02
127 2 0.02
131 57 0.48
132 2 0.02
ACGTcount: A:0.38, C:0.11, G:0.02, T:0.49
Consensus pattern (127 bp):
ACTTTTACAGTTTTACTCAACTAAAAACTCAATTTTAATTTAATTAAATCTAATATCCTTATACT
ATATTTTTACCATTTTACTATTTTAATTAAAAAACTTATATATATTCGAATTTTTTAAATAT
Found at i:94137 original size:14 final size:13
Alignment explanation
Indices: 94101--94139 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
94091 TATATATTCG
94101 AATTTTTTAAATA
1 AATTTTTTAAATA
* *
94114 TATTTCTTAAATGA
1 AATTTTTTAAAT-A
94128 AATTTTTTAAAT
1 AATTTTTTAAAT
94140 TTTACAACTT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
13 10 0.48
14 11 0.52
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.54
Consensus pattern (13 bp):
AATTTTTTAAATA
Found at i:130588 original size:19 final size:19
Alignment explanation
Indices: 130564--130600 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
130554 CTTATCTGTA
*
130564 ACCGTTTCATCACCGTTTG
1 ACCGTTTCACCACCGTTTG
130583 ACCGTTTCACCACCGTTT
1 ACCGTTTCACCACCGTTT
130601 TGGGACCAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.16, C:0.35, G:0.14, T:0.35
Consensus pattern (19 bp):
ACCGTTTCACCACCGTTTG
Found at i:130682 original size:21 final size:21
Alignment explanation
Indices: 130650--130708 Score: 70
Period size: 21 Copynumber: 2.9 Consensus size: 21
130640 CGCTGCTCTA
130650 ATAATCTCATCTGTACAGTAC
1 ATAATCTCATCTGTACAGTAC
130671 ATAAT-TCAATCTGTACAGT--
1 ATAATCTC-ATCTGTACAGTAC
* *
130690 GTAATCTCATATGTACAGT
1 ATAATCTCATCTGTACAGT
130709 TGCCAAACAG
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
19 14 0.41
20 4 0.12
21 16 0.47
ACGTcount: A:0.34, C:0.19, G:0.12, T:0.36
Consensus pattern (21 bp):
ATAATCTCATCTGTACAGTAC
Found at i:151113 original size:634 final size:634
Alignment explanation
Indices: 149905--151268 Score: 2719
Period size: 634 Copynumber: 2.2 Consensus size: 634
149895 AAGTTACATA
*
149905 TTACATAGTGGGAATTCAAATGAATGTTATACAGTGCATTCCTATTACATAGTGGGTGCAAATAA
1 TTACATAGTGGGAATTCAAATTAATGTTATACAGTGCATTCCTATTACATAGTGGGTGCAAATAA
149970 ATATATAAAACGTGTAACATGGCATTCCTATTATACATCAAGGTATAATGGTGCCTCTGAATAAA
66 ATATATAAAACGTGTAACATGGCATTCCTATTATACATCAAGGTATAATGGTGCCTCTGAATAAA
150035 AGTTGGAATGGAAATTCTTAATATGCAGTTAAAGGCACAACGATGCATTCCTATTATACATCAAG
131 AGTTGGAATGGAAATTCTTAATATGCAGTTAAAGGCACAACGATGCATTCCTATTATACATCAAG
150100 GTATAATGGTGCATTCAAATTAAAGTTGGTAGCGGGAATTTTTACTATGCTGTAATAGGCGCAAA
196 GTATAATGGTGCATTCAAATTAAAGTTGGTAGCGGGAATTTTTACTATGCTGTAATAGGCGCAAA
150165 GGTGGCATTCCTATTATACATAAAGGTATAGTGGTGCCAAGTTGAAGTAAAATCCTTGGGTGTAT
261 GGTGGCATTCCTATTATACATAAAGGTATAGTGGTGCCAAGTTGAAGTAAAATCCTTGGGTGTAT
150230 GGCGCTCTTAATTGTGTAATGAAAACATGGACCCCCATAAAGGCTTATGCCTCGTTTCCCACTCC
326 GGCGCTCTTAATTGTGTAATGAAAACATGGACCCCCATAAAGGCTTATGCCTCGTTTCCCACTCC
150295 ATTTCTTCTGATATATTTCCATTTGGGATTCAAGTTATTCAAATTTGTTTTGTGACAAATAAATA
391 ATTTCTTCTGATATATTTCCATTTGGGATTCAAGTTATTCAAATTTGTTTTGTGACAAATAAATA
150360 TGTATATGCACTAGACACCCTAAAATGGCAGCTATAAACTAGGTTACTTGTTTTTTACTTGGAAG
456 TGTATATGCACTAGACACCCTAAAATGGCAGCTATAAACTAGGTTACTTGTTTTTTACTTGGAAG
150425 GGTATTTTCTAATTATGGTCAGTTGCTCCTTGAAATCATCTCAGTACAATGACATGATTTCATAT
521 GGTATTTTCTAATTATGGTCAGTTGCTCCTTGAAATCATCTCAGTACAATGACATGATTTCATAT
150490 AAGATGCTTCGCTTACATGGCATTCTTACTGAATAGGCGCAAATTAATG
586 AAGATGCTTCGCTTACATGGCATTCTTACTGAATAGGCGCAAATTAATG
150539 TTACATAGTGGGAATTCAAATTAATGTTATACAGTGCATTCCTATTACATAGTGGGTGCAAATAA
1 TTACATAGTGGGAATTCAAATTAATGTTATACAGTGCATTCCTATTACATAGTGGGTGCAAATAA
150604 ATATATAAAACGTGTAACATGGCATTCCTATTATACATCAAGGTATAATGGTGCCTCTGAATAAA
66 ATATATAAAACGTGTAACATGGCATTCCTATTATACATCAAGGTATAATGGTGCCTCTGAATAAA
150669 AGTTGGAATGGAAATTCTTAATATGCAGTTAAAGGCACAACGATGCATTCCTATTATACATCAAG
131 AGTTGGAATGGAAATTCTTAATATGCAGTTAAAGGCACAACGATGCATTCCTATTATACATCAAG
150734 GTATAATGGTGCATTCAAATTAAAGTTGGTAGCGGGAATTTTTACTATGCTGTAATAGGCGCAAA
196 GTATAATGGTGCATTCAAATTAAAGTTGGTAGCGGGAATTTTTACTATGCTGTAATAGGCGCAAA
150799 GGTGGCATTCCTATTATACATAAAGGTATAGTGGTGCCAAGTTGAAGTAAAATCCTTGGGTGTAT
261 GGTGGCATTCCTATTATACATAAAGGTATAGTGGTGCCAAGTTGAAGTAAAATCCTTGGGTGTAT
150864 GGCGCTCTTAATTGTGTAATGAAAACATGGACCCCCATAAAGGCTTATGCCTCGTTTCCCACTCC
326 GGCGCTCTTAATTGTGTAATGAAAACATGGACCCCCATAAAGGCTTATGCCTCGTTTCCCACTCC
150929 ATTTCTTCTGATATATTTCCATTTGGGATTCAAGTTATTCAAATTTGTTTTGTGACAAATAAATA
391 ATTTCTTCTGATATATTTCCATTTGGGATTCAAGTTATTCAAATTTGTTTTGTGACAAATAAATA
150994 TGTATATGCACTAGACACCCTAAAATGGCAGCTATAAACTAGGTTACTTGTTTTTTACTTGGAAG
456 TGTATATGCACTAGACACCCTAAAATGGCAGCTATAAACTAGGTTACTTGTTTTTTACTTGGAAG
151059 GGTATTTTCTAATTATGGTCAGTTGCTCCTTGAAATCATCTCAGTACAATGACATGATTTCATAT
521 GGTATTTTCTAATTATGGTCAGTTGCTCCTTGAAATCATCTCAGTACAATGACATGATTTCATAT
151124 AAGATGCTTCGCTTACATGGCATTCTTACTGAATAGGCGCAAATTAATG
586 AAGATGCTTCGCTTACATGGCATTCTTACTGAATAGGCGCAAATTAATG
151173 TTACATAGTGGGAATTCAAATTAATGTTATACAGTGCATTCCTATTACATAGTGGGTGCAAATAA
1 TTACATAGTGGGAATTCAAATTAATGTTATACAGTGCATTCCTATTACATAGTGGGTGCAAATAA
151238 ATATATAAAACGTGTAACATGGCATTCCTAT
66 ATATATAAAACGTGTAACATGGCATTCCTAT
Statistics
Matches: 729, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
634 729 1.00
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.34
Consensus pattern (634 bp):
TTACATAGTGGGAATTCAAATTAATGTTATACAGTGCATTCCTATTACATAGTGGGTGCAAATAA
ATATATAAAACGTGTAACATGGCATTCCTATTATACATCAAGGTATAATGGTGCCTCTGAATAAA
AGTTGGAATGGAAATTCTTAATATGCAGTTAAAGGCACAACGATGCATTCCTATTATACATCAAG
GTATAATGGTGCATTCAAATTAAAGTTGGTAGCGGGAATTTTTACTATGCTGTAATAGGCGCAAA
GGTGGCATTCCTATTATACATAAAGGTATAGTGGTGCCAAGTTGAAGTAAAATCCTTGGGTGTAT
GGCGCTCTTAATTGTGTAATGAAAACATGGACCCCCATAAAGGCTTATGCCTCGTTTCCCACTCC
ATTTCTTCTGATATATTTCCATTTGGGATTCAAGTTATTCAAATTTGTTTTGTGACAAATAAATA
TGTATATGCACTAGACACCCTAAAATGGCAGCTATAAACTAGGTTACTTGTTTTTTACTTGGAAG
GGTATTTTCTAATTATGGTCAGTTGCTCCTTGAAATCATCTCAGTACAATGACATGATTTCATAT
AAGATGCTTCGCTTACATGGCATTCTTACTGAATAGGCGCAAATTAATG
Done.