Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019219.1 Corchorus olitorius cultivar O-4 contig19252, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49957

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
557--879
160
2.0
160
99
0
637
28
17
19
34
1.95
774--987
88
2.4
89
85
3
279
33
13
21
31
1.92
1048--1150
49
2.1
49
96
0
188
20
32
10
36
1.87
8148--8212
33
2.0
33
84
0
85
12
29
38
20
1.89
8165--8289
33
3.6
35
73
14
105
10
32
40
17
1.84
19860--20020
30
5.3
30
73
4
97
13
3
67
16
1.36
19863--20021
33
4.7
33
74
13
119
13
2
66
16
1.35
19884--20020
60
2.3
60
83
0
157
13
2
65
17
1.38
19935--20021
30
2.9
29
80
11
104
14
2
67
14
1.32
22135--22172
20
1.9
20
100
0
76
47
5
18
28
1.70
28059--28107
23
2.1
23
85
7
64
38
2
0
59
1.09
28906--28940
2
17.0
2
94
5
61
48
2
0
48
1.16
30165--30208
21
2.1
21
91
0
70
59
0
6
34
1.24
32857--32884
14
2.0
14
100
0
56
57
0
7
35
1.26
33815--33847
16
2.1
16
94
0
57
42
24
9
24
1.83
39050--39107
29
2.0
29
100
0
116
10
3
34
51
1.53
48048--48153
47
2.4
45
93
6
180
8
18
16
56
1.64
49361--49408
13
3.8
12
79
17
53
45
10
0
43
1.38
49612--49654
21
2.0
21
86
0
59
18
41
6
32
1.77

Tables:   1

The End!