Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019223.1 Corchorus olitorius cultivar O-4 contig19256, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  108060

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
119--913
320
2.5
319
83
6
1013
35
16
14
32
1.90
2898--2961
32
2.0
32
100
0
128
34
9
28
28
1.88
6749--6776
1
28.0
1
100
0
56
0
0
0
100
0.00
12627--12654
9
3.1
9
100
0
56
32
21
25
21
1.98
12853--12972
37
3.4
37
69
16
119
37
8
14
40
1.76
12838--12975
69
2.0
69
98
0
267
36
9
15
37
1.80
13915--13961
10
4.4
10
80
15
58
42
8
17
31
1.79
29227--29528
152
2.0
149
96
1
550
28
15
21
35
1.93
47317--47356
21
1.9
21
85
10
55
70
0
27
2
1.01
60351--60423
1
73.0
1
91
0
110
5
0
0
94
0.31
62962--63001
2
20.0
2
89
0
62
45
0
0
55
0.99
62965--63001
14
2.6
14
100
0
74
43
0
0
56
0.99
68977--69190
101
2.1
101
90
0
329
40
15
10
33
1.82
70994--71058
2
32.0
2
77
20
64
44
4
3
47
1.39
80152--80213
32
1.9
32
96
0
115
37
17
16
29
1.92
89917--89941
2
12.5
2
100
0
50
0
52
0
48
1.00
97247--97281
16
2.2
16
100
0
70
25
5
17
51
1.67

Tables:   1

The End!