Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019225.1 Corchorus olitorius cultivar O-4 contig19258, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  112178

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9767--9824
27
2.2
27
90
6
93
55
8
8
27
1.60
16006--16071
33
2.0
33
96
0
123
30
13
12
43
1.80
26164--26209
15
3.0
15
87
3
56
67
2
0
30
1.03
26570--26611
19
2.3
18
84
8
57
61
0
4
33
1.17
26575--26611
19
2.0
19
89
5
58
64
0
2
32
1.07
29818--29852
6
5.7
6
86
6
52
48
5
0
45
1.26
36834--36867
2
17.5
2
93
6
61
50
0
0
50
1.00
40309--40351
2
21.5
2
95
0
77
51
2
0
46
1.13
48471--48547
29
2.6
29
81
2
91
15
28
27
28
1.96
51070--51125
24
2.3
24
78
6
60
78
1
8
10
1.03
54395--54514
60
2.0
60
90
3
188
25
18
19
37
1.94
54403--54529
60
2.1
60
84
5
159
26
18
21
33
1.96
57054--57094
21
2.0
20
90
9
66
26
14
21
36
1.93
59047--59077
2
15.5
2
100
0
62
0
0
48
51
1.00
61271--61306
18
2.1
18
94
5
65
58
13
11
16
1.63
65082--65108
4
6.8
4
100
0
54
22
0
0
77
0.76
77176--77427
131
2.0
127
89
6
386
49
1
11
37
1.49
83576--83640
29
2.2
31
86
5
89
43
7
20
29
1.79
86226--86301
30
2.4
32
89
8
129
27
18
13
40
1.88

Tables:   1

The End!