genome.fa.s19228.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019228.1 Corchorus olitorius cultivar O-4 contig19261, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97673

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
744--843	13	7.5	13	69	18	71	24	16	41	19	1.90
742--852	41	2.7	40	88	4	177	24	18	38	18	1.93
10059--10083	2	12.5	2	100	0	50	48	0	0	52	1.00
11148--11216	24	2.9	24	82	0	75	53	4	1	40	1.30
14676--14709	9	3.8	9	88	0	50	61	0	38	0	0.96
14932--15010	29	2.7	29	86	4	95	43	10	17	29	1.82
15656--15680	12	2.1	12	100	0	50	52	8	0	40	1.31
18473--18808	169	2.0	169	97	1	629	36	17	11	33	1.87
18979--19066	44	2.0	44	100	0	176	56	6	22	13	1.61
19883--19940	28	2.1	28	96	0	107	50	8	15	25	1.73
20573--20609	18	2.1	18	100	0	74	27	21	24	27	1.99
21163--21205	19	2.4	18	88	7	61	65	20	4	9	1.40
24382--24466	29	2.8	30	82	7	91	32	18	11	36	1.88
32415--32460	23	2.0	23	91	0	74	34	17	15	32	1.91
35602--35762	78	2.1	78	95	0	286	34	13	0	50	1.46
36295--36352	23	2.5	23	100	0	116	8	8	25	56	1.58
37155--37216	4	15.5	4	100	0	124	25	0	24	50	1.50
39605--39648	22	2.0	22	100	0	88	22	31	4	40	1.74
56699--56759	32	1.9	32	86	0	86	27	18	24	29	1.98
56993--57031	14	2.8	13	88	7	51	46	0	0	53	1.00
57894--57932	11	3.7	10	83	12	51	53	2	0	43	1.14
57900--57933	11	3.1	11	91	8	52	52	2	0	44	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58641--58688	2	23.5	2	87	4	69	45	0	6	47	1.27
58912--59930	437	2.3	434	82	6	1216	43	12	13	30	1.81
61349--61408	22	2.7	21	82	14	68	26	43	25	5	1.75
73201--73240	21	1.9	21	89	0	62	35	17	10	37	1.83
73235--73275	17	2.4	17	95	4	73	29	17	14	39	1.89
75445--75591	60	2.4	60	81	4	179	36	17	17	29	1.93
76518--76679	60	2.7	60	88	0	227	25	19	19	35	1.95
76551--76649	29	3.3	29	65	15	76	26	21	20	32	1.97
79414--79456	18	2.4	18	84	7	52	16	18	39	25	1.91
79912--79960	25	2.0	25	95	0	89	36	18	14	30	1.90
88272--88547	149	1.8	150	93	0	482	35	21	11	31	1.89

Tables:   1

The End!