genome.fa.s19230.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019230.1 Corchorus olitorius cultivar O-4 contig19263, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  192316

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
423--524	31	3.4	31	73	10	102	36	9	21	32	1.86
1253--1297	22	2.0	22	100	0	90	20	17	8	53	1.70
3791--3845	27	2.1	27	86	10	78	45	23	7	23	1.78
6187--6212	13	2.0	13	100	0	52	15	0	0	84	0.62
12589--12695	53	2.0	55	85	10	150	38	6	3	51	1.46
13295--15256	328	6.0	327	76	7	1637	34	14	16	35	1.89
15265--18197	331	8.9	331	75	8	2325	32	14	16	36	1.89
15335--18140	654	4.3	651	76	8	2236	32	14	16	35	1.89
16390--18195	977	1.8	981	84	3	2463	32	14	16	35	1.90
18330--18592	107	2.5	105	89	3	386	40	9	9	40	1.70
18751--20004	328	3.8	326	79	7	1183	32	14	16	35	1.90
19571--20476	473	1.9	473	87	1	1334	32	15	16	35	1.90
20010--20642	332	1.9	331	84	2	858	33	13	17	35	1.89
20659--21923	332	3.8	331	85	3	1573	32	14	17	35	1.90
21993--22369	195	1.9	197	82	4	467	36	11	16	36	1.85
22207--22838	335	1.9	332	81	3	759	32	13	17	36	1.89
23586--24635	332	3.2	320	79	8	969	33	14	16	36	1.89
23587--24635	320	3.2	327	80	7	1011	33	14	16	36	1.89
28183--28229	17	2.8	17	93	3	78	21	10	10	57	1.62
64587--64688	49	2.1	49	90	0	159	50	16	10	22	1.76
66813--66852	11	3.6	11	89	0	62	85	2	12	0	0.71
67005--67142	33	4.2	33	84	0	186	26	30	31	11	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68079--68111	17	1.9	17	93	0	57	30	18	15	36	1.91
81756--81815	3	20.0	3	87	0	57	0	23	36	40	1.55
115633--115769	68	2.0	68	100	0	274	28	21	30	18	1.97
116288--116405	59	2.0	59	98	0	227	44	18	16	20	1.86
119572--119636	32	2.0	32	100	0	130	56	9	21	12	1.63
124619--125224	237	2.5	239	85	1	804	33	20	18	26	1.96
125720--125914	97	2.0	97	95	0	354	37	23	14	24	1.93
126536--127134	238	2.5	240	87	1	844	34	21	18	25	1.96
128113--128167	18	3.1	18	94	0	92	50	18	0	30	1.47
128106--128176	28	2.5	29	80	11	85	50	15	2	30	1.58
128106--128166	10	6.5	10	80	14	76	50	18	1	29	1.56
128194--128251	3	19.3	3	100	0	116	67	0	0	32	0.91
128447--128544	47	2.1	47	96	0	178	43	1	27	27	1.61
128463--128539	24	3.2	24	69	10	77	45	0	25	28	1.54
142398--142422	2	12.5	2	100	0	50	0	0	48	52	1.00
151475--151503	2	14.5	2	100	0	58	0	48	0	51	1.00
161996--162022	6	4.5	6	100	0	54	18	33	0	48	1.49
175263--175308	12	4.3	11	78	21	53	45	0	0	54	0.99
175379--175462	30	2.9	29	84	8	109	42	2	3	51	1.32
175419--175462	21	2.1	21	83	8	54	47	2	0	50	1.13
175635--175689	24	2.2	25	90	9	94	36	9	3	50	1.51
175641--175690	24	2.1	24	100	0	100	38	8	4	50	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
176885--177429	271	2.0	273	97	0	1022	43	12	20	24	1.85
181490--181530	23	1.9	20	85	14	55	17	29	0	53	1.44
186395--186429	11	3.2	11	91	0	61	0	2	17	80	0.84
191246--191289	20	2.1	21	88	12	65	65	0	27	6	1.17
191675--191718	23	1.9	23	86	9	63	65	2	29	2	1.16

Tables:   1

The End!