Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019231.1 Corchorus olitorius cultivar O-4 contig19264, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  108234

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
200--661
230
2.0
229
92
0
762
36
15
14
33
1.88
4476--4501
7
3.7
7
100
0
52
26
30
11
30
1.92
6014--6087
36
2.0
37
87
7
107
51
9
16
22
1.73
6295--6349
27
2.0
27
100
0
110
49
7
14
29
1.70
6295--6359
27
2.4
27
92
5
96
44
6
15
33
1.71
19253--19299
20
2.6
18
87
12
62
59
10
29
0
1.31
21951--21989
20
1.9
21
89
5
62
38
0
20
41
1.53
44497--44559
30
2.1
30
96
0
117
44
15
11
28
1.81
44874--44952
39
2.0
39
100
0
158
27
20
12
39
1.89
45500--45588
43
2.1
43
89
0
133
37
30
15
16
1.91
45824--45860
18
2.1
18
94
0
65
35
24
5
35
1.78
54319--54366
20
2.2
22
85
10
64
72
8
6
12
1.26
57976--58039
31
2.0
31
82
11
76
20
1
25
53
1.55
62028--62229
102
2.0
99
88
2
296
30
16
19
34
1.94
65771--66120
91
4.0
91
78
15
455
22
7
22
47
1.76
65868--66023
78
2.0
78
100
0
312
21
6
23
48
1.73
65776--66185
169
2.5
168
94
3
717
21
6
21
49
1.72
66052--66185
70
1.9
70
98
0
259
20
3
20
55
1.58
66876--66907
15
2.1
15
94
0
55
43
0
0
56
0.99
72467--72506
15
2.7
15
88
0
53
50
0
30
20
1.49
72467--72506
9
4.8
9
79
17
50
50
0
30
20
1.49
77401--77428
14
2.0
14
100
0
56
42
14
14
28
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
78960--79016
25
2.4
24
88
5
80
31
5
3
59
1.36
91158--91243
42
2.0
42
97
0
163
19
10
27
41
1.84
103750--103781
17
1.9
16
93
6
55
34
21
25
18
1.96
108191--108227
2
18.5
2
100
0
74
48
0
0
51
1.00

Tables:   1

The End!