Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019232.1 Corchorus olitorius cultivar O-4 contig19265, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74630

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
890--923
9
3.9
9
88
7
52
85
0
14
0
0.60
888--924
13
2.9
12
92
8
56
86
0
13
0
0.57
11379--11436
21
2.9
19
84
5
71
32
17
10
39
1.83
12759--12862
51
2.0
51
96
0
190
18
15
31
34
1.92
17939--18041
36
3.0
36
87
9
144
40
25
1
32
1.67
17952--18053
32
3.1
32
88
8
134
40
24
3
31
1.73
18568--18595
7
4.0
7
100
0
56
28
14
57
0
1.38
19675--19725
14
3.2
16
78
13
52
35
23
7
33
1.84
22418--22468
14
3.2
16
78
13
52
35
23
7
33
1.84
22512--22559
23
2.1
23
96
0
87
39
27
6
27
1.80
31352--31395
23
1.9
23
90
0
70
38
4
29
27
1.76
47658--47799
47
3.0
47
98
0
275
6
24
14
54
1.64
52226--52307
40
2.0
40
90
0
128
45
15
14
24
1.84
55876--55905
15
1.9
16
93
6
53
13
26
0
60
1.34
56786--56870
42
2.0
42
95
0
152
34
20
23
22
1.97
66744--67264
281
1.9
276
84
9
696
42
15
13
28
1.84
72525--72751
107
2.1
107
92
1
375
41
9
10
38
1.72
73882--73931
21
2.4
21
89
0
73
30
38
4
28
1.75

Tables:   1

The End!