Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019233.1 Corchorus olitorius cultivar O-4 contig19266, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93527

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1765--1805
21
2.0
21
95
0
73
26
36
4
31
1.78
5592--5624
12
2.8
12
90
4
50
30
0
0
69
0.88
6640--6887
121
2.0
122
91
4
399
44
23
10
20
1.83
7273--7304
12
2.8
12
86
13
50
56
0
0
43
0.99
14943--15001
24
2.5
24
80
0
82
22
1
18
57
1.49
16624--16677
2
26.0
2
92
7
90
48
0
3
48
1.19
31095--31420
179
1.8
178
83
4
433
36
12
14
37
1.84
42795--42826
15
2.1
15
100
0
64
50
6
31
12
1.65
54529--54555
8
3.4
8
100
0
54
14
0
0
85
0.61
57214--57238
4
6.2
4
100
0
50
76
0
24
0
0.80
60646--60694
15
3.2
15
88
2
62
36
0
4
59
1.17
61038--66158
331
15.6
330
77
8
4254
33
15
15
36
1.89
61085--66165
656
7.7
646
77
10
2217
33
15
15
36
1.89
62625--66175
330
10.9
330
80
5
3548
32
15
15
35
1.90
66972--67197
117
2.0
113
86
6
321
42
14
24
19
1.88
67931--67956
2
13.0
2
100
0
52
50
0
0
50
1.00
68648--68682
15
2.4
15
95
4
63
31
17
5
45
1.71
69622--69647
10
2.6
10
100
0
52
92
0
0
7
0.39
70058--70109
23
2.3
23
89
0
77
36
0
11
51
1.38
75701--75741
21
2.0
21
90
0
64
34
9
19
36
1.85
75997--76059
33
1.9
33
86
0
90
22
9
30
38
1.86
76194--76232
20
2.0
20
85
10
53
33
5
7
53
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
89990--90032
10
4.4
10
82
14
54
83
2
13
0
0.74
89992--90032
19
2.2
19
91
8
66
85
2
12
0
0.70

Tables:   1

The End!