Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019236.1 Corchorus olitorius cultivar O-4 contig19269, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97311

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3--65
2
31.5
2
100
0
126
0
49
0
50
1.00
7567--7614
24
2.0
24
95
0
87
18
12
39
29
1.88
7567--7628
21
2.7
23
85
7
74
17
14
37
30
1.90
21924--22021
29
3.3
29
71
10
81
34
12
19
33
1.89
21905--22053
60
2.5
60
81
4
192
34
15
18
30
1.92
22097--22233
31
4.5
31
74
7
118
28
19
17
34
1.95
30113--30221
31
3.6
31
70
14
100
35
20
19
24
1.95
30053--30212
60
2.7
59
87
4
223
37
17
16
28
1.92
30258--30362
31
3.5
30
71
15
99
27
20
18
34
1.95
46444--46473
7
4.1
7
95
4
51
86
0
13
0
0.57
52834--52871
11
3.5
11
85
10
51
57
2
0
39
1.12
61093--61124
16
2.1
15
94
5
55
0
9
0
90
0.45
61095--61125
10
3.0
10
95
4
53
0
12
0
87
0.55
68095--68125
3
10.3
3
100
0
62
67
0
0
32
0.91
68974--68999
2
13.0
2
100
0
52
50
0
0
50
1.00
69294--69331
20
1.9
20
94
0
67
52
18
0
28
1.45
69676--70531
439
1.9
440
81
4
1041
28
13
16
41
1.86
70913--70997
40
2.1
40
86
4
118
28
9
14
48
1.74
71648--71752
53
2.0
53
96
3
194
27
30
13
28
1.94
72017--72274
128
2.0
128
85
5
344
24
12
21
41
1.88
75322--75475
79
1.9
79
94
2
274
30
32
7
29
1.86
80791--80830
7
5.6
7
91
5
62
42
2
0
55
1.13
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
82936--82976
19
2.2
19
86
0
55
12
43
0
43
1.41
83602--83644
21
2.0
21
100
0
86
46
9
9
34
1.68
84807--84857
23
2.0
25
82
14
61
43
1
3
50
1.31
86754--86894
71
2.0
71
98
0
273
41
26
6
26
1.79
87354--87391
2
19.0
2
94
0
67
52
0
0
47
1.00
89010--89049
20
2.0
20
90
0
62
20
42
7
30
1.79
89018--89055
20
1.9
20
88
0
58
15
44
13
26
1.83
94650--94688
14
2.9
13
80
3
51
53
2
2
41
1.28
94674--94918
131
1.9
127
89
6
381
50
1
11
37
1.48
95013--95055
2
20.5
2
81
9
50
46
4
4
44
1.45
95336--95418
30
3.0
27
83
10
112
40
3
3
51
1.37

Tables:   1

The End!