Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019238.1 Corchorus olitorius cultivar O-4 contig19271, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77473

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3218--3287
36
1.9
36
97
0
131
61
7
8
22
1.49
5544--5616
35
2.1
35
100
0
146
19
20
8
52
1.71
5620--5664
22
2.0
22
95
0
81
24
11
17
46
1.81
13685--13768
41
2.0
42
86
6
118
38
14
2
45
1.58
13882--13906
2
12.5
2
100
0
50
52
0
0
48
1.00
24671--24698
4
7.0
4
100
0
56
25
75
0
0
0.81
25113--25161
21
2.4
20
80
19
57
59
8
20
12
1.58
34195--34222
2
14.0
2
100
0
56
50
0
50
0
1.00
35946--35974
13
2.2
13
100
0
58
0
13
0
86
0.58
37477--37541
21
3.1
21
66
24
55
50
13
4
30
1.62
37880--37933
25
2.2
25
89
0
81
38
7
7
46
1.60
38088--38157
33
2.1
33
86
0
95
14
32
41
11
1.81
59369--59426
19
2.9
20
84
5
73
36
10
22
31
1.88
60114--60150
19
1.9
19
94
0
65
16
35
13
35
1.88
77396--77459
30
2.2
28
81
10
76
46
1
3
48
1.27

Tables:   1

The End!