Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019239.1 Corchorus olitorius cultivar O-4 contig19272, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13664
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.30


Found at i:444 original size:16 final size:16

Alignment explanation


    Indices: 423--454  Score: 64
    Period size: 16  Copynumber: 2.0  Consensus size: 16

        413 GGCTATCCAA

                            
        423 TTGATTTTGATTATAT
          1 TTGATTTTGATTATAT

                            
        439 TTGATTTTGATTATAT
          1 TTGATTTTGATTATAT

        455 ATATGTGTGT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   16  1.00

ACGTcount: A:0.25, C:0.00, G:0.12, T:0.62


Consensus pattern (16 bp):   
TTGATTTTGATTATAT

Found at i:4499 original size:16 final size:16

Alignment explanation


    Indices: 4478--4509  Score: 64
    Period size: 16  Copynumber: 2.0  Consensus size: 16

       4468 TTTCAAGTGA

                            
       4478 TTTGACACATGTTCCT
          1 TTTGACACATGTTCCT

                            
       4494 TTTGACACATGTTCCT
          1 TTTGACACATGTTCCT

       4510 CTCAAACAAG


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   16  1.00

ACGTcount: A:0.19, C:0.25, G:0.12, T:0.44


Consensus pattern (16 bp):   
TTTGACACATGTTCCT
Done.