genome.fa.s19240.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019240.1 Corchorus olitorius cultivar O-4 contig19273, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  277473

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6193--6242	21	2.4	21	79	0	55	20	56	4	20	1.58
6851--6922	24	3.0	24	75	0	63	27	44	6	20	1.77
7019--7095	24	3.5	23	68	26	67	19	58	1	20	1.47
7034--7339	21	14.1	21	68	8	112	19	55	5	18	1.63
7021--7182	42	3.8	42	82	4	189	19	57	3	19	1.54
6338--7097	198	3.9	194	77	9	761	27	42	9	21	1.83
6338--7097	396	1.9	392	80	6	878	27	42	9	21	1.83
7121--7202	24	3.5	24	67	9	71	24	54	4	15	1.61
7018--7314	45	6.8	45	80	3	189	20	55	5	18	1.61
7129--7316	87	2.2	87	80	0	214	22	54	7	15	1.66
28048--28223	88	2.0	88	97	0	334	44	13	15	26	1.84
31041--31075	3	11.7	3	100	0	70	65	0	0	34	0.93
32422--32518	45	2.2	45	83	1	115	39	4	16	40	1.68
40102--40130	5	5.8	5	100	0	58	79	0	20	0	0.74
42936--42975	20	2.0	20	100	0	80	20	20	25	35	1.96
43238--43262	2	12.5	2	100	0	50	52	0	0	48	1.00
45984--46009	1	26.0	1	100	0	52	0	0	0	100	0.00
47461--47504	19	2.1	22	88	12	67	38	6	6	47	1.57
56752--56820	27	2.6	27	85	0	93	33	18	14	33	1.91
59413--59471	21	2.9	21	82	7	77	28	10	18	42	1.83
59861--59909	23	2.2	23	88	3	73	67	6	20	6	1.35
59870--59911	12	3.6	12	83	6	59	61	7	21	9	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61012--61099	45	1.9	45	93	4	149	15	5	21	56	1.60
65079--65124	24	2.0	22	87	8	65	58	0	6	34	1.24
65076--65124	23	2.1	24	88	3	73	59	0	8	32	1.27
74261--74301	16	2.5	17	76	11	50	36	2	2	58	1.24
74951--74986	1	36.0	1	100	0	72	100	0	0	0	0.00
93813--93891	30	2.6	30	97	2	149	37	21	8	31	1.84
113242--113430	100	1.9	101	87	6	285	30	11	25	32	1.91
121421--121469	23	2.1	23	100	0	98	26	20	16	36	1.93
133390--133414	12	2.1	12	100	0	50	24	44	16	16	1.86
133436--133478	18	2.4	18	88	0	59	32	55	4	6	1.47
133437--133489	18	2.9	18	83	5	54	37	54	3	3	1.36
133438--133489	24	2.2	24	82	6	61	38	53	3	3	1.37
134515--134622	31	3.6	29	73	14	103	26	19	19	34	1.96
144961--145029	30	2.3	29	80	7	77	34	28	11	24	1.91
147781--147807	13	2.1	13	100	0	54	44	7	14	33	1.73
162633--162661	13	2.2	13	100	0	58	37	13	37	10	1.79
170854--170937	31	2.5	32	85	12	100	19	9	17	53	1.70
171007--171048	20	2.1	20	86	0	57	33	2	2	61	1.21
172014--172038	4	6.2	4	100	0	50	76	24	0	0	0.80
183750--183796	23	2.0	24	95	4	87	17	17	0	65	1.27
183946--184003	21	2.9	20	84	5	73	31	20	12	36	1.89
184168--184204	16	2.3	16	100	0	74	24	13	10	51	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
197944--197996	4	13.5	4	86	4	72	77	0	22	0	0.77
213787--213861	38	2.0	38	100	0	150	40	13	24	22	1.90
213858--213897	13	3.1	12	89	7	53	55	0	2	42	1.13
218562--218595	9	3.7	9	92	4	50	52	11	11	23	1.70
236170--236227	28	2.0	28	93	6	98	58	13	5	22	1.55
250266--250401	69	2.0	69	98	0	263	41	29	10	19	1.84
254540--254789	124	2.0	124	99	0	491	44	16	10	29	1.81
254732--254964	116	2.0	116	97	0	439	42	19	10	27	1.85
254872--255022	74	2.0	74	93	0	257	33	22	15	28	1.94
254946--255594	146	4.7	127	86	10	605	33	23	14	28	1.94
255198--255617	146	2.9	146	97	0	795	31	25	14	27	1.95
255964--256069	52	2.0	52	100	0	212	35	15	18	30	1.92
258641--258676	10	3.8	10	85	14	58	44	5	5	44	1.50
258639--258680	18	2.3	18	100	0	84	45	4	4	45	1.45
259935--259992	30	1.9	31	89	3	91	48	5	20	25	1.70
264084--264163	42	1.9	42	92	0	133	37	12	18	31	1.88
267139--267297	60	2.7	60	84	2	194	37	16	16	29	1.91
267342--267502	60	2.7	59	81	4	207	29	19	16	34	1.94
268290--268491	104	2.0	103	95	2	363	34	20	17	27	1.95
270119--270174	25	2.2	26	93	6	96	44	17	7	30	1.76
274668--274700	2	16.5	2	100	0	66	51	0	0	48	1.00
276062--276130	33	2.1	33	97	0	129	27	13	27	31	1.93

Tables:   1

The End!