Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01019242.1 Corchorus olitorius cultivar O-4 contig19275, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 11775
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33
Found at i:8632 original size:336 final size:331
Alignment explanation
Indices: 6037--9052 Score: 2308
Period size: 336 Copynumber: 9.1 Consensus size: 331
6027 AACTAGAACT
* * * * * * *
6037 AATGTGACTGAGATTTGGTTATAATTCAATATAGATATTTCAAGGAGTCTTGGTGCTAAAAATTA
1 AATGTGGCTGAGATTTGGTTA-GA-TGAATATAGATATTTCAATGAGTCTTGGCGCCAAAAATCA
* * *
6102 TGCAAAACTGAGTCGGGGCCCTAGAACGCGTTTTTAGCC-AAAAC-CG-TG----------ACGA
64 TGCAAAACTGAGCCGAGGCCCCAGAACGCGTTTTTAGCCAAAAACGCGATGTTAAATATACACGA
* * * * ** * * *
6154 TTTCGTCTAAAATTTTGCAAAAACTGACCTGAAAAAGCTTTCCTCAATATTTGGCCA-AGTACTC
129 TTTTGGCTAAAATTTTGCAAAAATTGACCCG-AAAATTTTTCCTCAATTTTTAGCCACAATACTC
* * * * * **
6218 AAAAAAAATATATAATTCAACGCTAAAAAGATTGGAGGACTTTTCACATTTCTAATATCGTTTTC
193 ATAAAGAATATATAATTCAACGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTC
* * * *
6283 CTTTTTTTTTTTTTTTTCCCCAAATTAATTT-AAGATTCAATCG-AAATCGTGTTCTGATGCTCG
258 C-----CTTTTTTTTTT----GAATTAATTTCTA-ATTAAATCGAAAAT-GT-TTCTGATGCTCG
* *
6346 GAAAAACAAATCCTTAAATTC
311 AAAAAACAAATCCTTAAATCC
* * * * * * **
6367 AACGTGGCTAAGATTTGCTTAGATGAATATAGATATTTCAATGAGTCTCGGTGTCAAAAATCACA
1 AATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAATGAGTCTTGGCGCCAAAAATCATG
* * * * * * * * *
6432 CAAAATTAAGCCGAGACCCCCCGAACGCATTTGTAGGCAATATATAACCGCAATGGTT-AGTATA
66 CAAAACTGAGCCGAG-GCCCCAGAACGCGTTTTTA-GCCA-A-A-AA-CGCGAT-GTTAAATATA
* * *
6496 CATGATTTTGGTTAAAATTTTGCAAAAATTGACCCTTAAAATTTTTCCTCAATTTTTAGCCACAA
124 CACGATTTTGGCTAAAATTTTGCAAAAATTGACCC-GAAAATTTTTCCTCAATTTTTAGCCACAA
* * *
6561 TAATCA-AAGAGAATATATATTTCAACGCCAAAAAGATTGAAGGGCTTTTCACGTTTCTAATATC
188 TACTCATAA-AGAATATATAATTCAACGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATATC
* *
6625 GTTTTTCCTTTTTTTTTTGAATTAATTTCTAATTATATC-AAAACTGGTTTCTGATGCTCGAAAA
252 GTTTTCCCTTTTTTTTTTGAATTAATTTCTAATTAAATCGAAAA-T-GTTTCTGATGCTCGAAAA
*
6689 AACAAATCCTTATATCC
315 AACAAATCCTTAAATCC
* * *
6706 AATGTGGCTGAGATTTGGTTAGTTGAATATAGATATTTCAAGGAGTCTTGGTGCCAAAAATCATG
1 AATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAATGAGTCTTGGCGCCAAAAATCATG
* * ** * * * *
6771 TAAAACTGAGCCGGGGCATC-GAAACACGTTTTTGGCCAAAAACTGTGATATGTT--A-CTACAC
66 CAAAACTGAGCCGAGGCCCCAG-AACGCGTTTTTAGCCAAAAAC-GCG--ATGTTAAATATACAC
* * * ** * ** *
6832 GATTTCGGCTAAAATTATGCAAAAACTGACCCGAAAAAAATGTCCTCTTTTTTTTGCCACAATAC
127 GATTTTGGCTAAAATTTTGCAAAAATTGACCCG-AAAATTTTTCCTCAATTTTTAGCCACAATAC
* * ** * *
6897 TTATAAAAAATATATAATTCAACGAAAAAAAGATTGAAGGACTTTTCACGCTTCTAATATAGTTT
191 TCATAAAGAATATATAATTCAACGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATATCGTTT
* ** *** * * * * * * * *
6962 TTCCTACATTTTTCCAAATTAATTTGTGATTAAATCGAAATAAGATTCAGATGCTTGTAACAACA
256 TCCCT-TTTTTTTTTGAATTAATTTCTAATTAAATCGAAA-ATGTTTCTGATGCTCGAAAAAACA
* *
7027 TATACTTAAATCC
319 AATCCTTAAATCC
** * * *
7040 AACATGGCTGAGATTTGATTAGATGAATATAGATATTTC-ATGGAGTCTCGGCGGCAAAAATCAT
1 AATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAT-GAGTCTTGGCGCCAAAAATCAT
* * * * * * **
7104 GCAAAATTGAACCGGGGCCTCGGAACGCGTTTTTAGCCAAATAC-CATGATGGTTACTGGTTAAT
65 GCAAAACTGAGCCGAGGCCCCAGAACGCGTTTTTAGCCAAAAACGC--GAT-GTTA---AAT-AT
* * * * * * *
7168 ATACGATTTCGGCTAAAATTTTCCAAAAATTGGCCCTAAATATTTTTCTCTCAATTTTTGGCCAA
123 ACACGATTTTGGCTAAAATTTTGCAAAAATTGACCCGAAA-ATTTTTC-CTCAATTTTTAGCCAC
* * * *
7233 AATACTCATAAAAAATATATAATTCAACGCAAAAAAGATTGGAGTGCTTTAT-ACGCTTCTAATA
186 AATACTCATAAAGAATATATAATTCAACGCCAAAAAGATTGAAGGGCTTT-TCACGCTTCTAATA
* * ** * *
7297 TCGTTTTCCCTTTTTTTTACTGAATTAATTTCTAATTCAATCGAAACCGGTTTGTGATGCTCGGA
250 TCGTTTTCCCTTTTTTTT-TTGAATTAATTTCTAATTAAATCGAAA-ATGTTTCTGATGCTCGAA
** * *
7362 AAATTAAGTCCTTAAAGCC
313 AAAACAAATCCTTAAATCC
* ** * * *
7381 AATGTGGTTGAGATTTACTTAGATGAATATAGATATTTCAATGAGTCTCGACGCCAAAAATCACG
1 AATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAATGAGTCTTGGCGCCAAAAATCATG
* * * * * *
7446 CAAAATTGAGCCAAAGCCCCAGAACGCGTTTTTAGCCAAAAATTGCGATG-TAACGTGTACACGA
66 CAAAACTGAGCCGAGGCCCCAGAACGCGTTTTTAGCCAAAAA-CGCGATGTTAA-ATATACACGA
* * * *
7510 TTTTGACTAAAATTTTACAAAAATTGACCCGAAAGTTTTTTCCTCAATTTTTAGCCACAATAATC
129 TTTTGGCTAAAATTTTGCAAAAATTGACCCGAAA-ATTTTTCCTCAATTTTTAGCCACAATACTC
* * * *
7575 ATAGAGAAAATATAATTCAACGCCAAAAAGATTGAAGAGCTTTTCACGCTTCTAATATC--ATT-
193 ATAAAGAATATATAATTCAACGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTC
* * * * * *
7637 --TTTTTTGTGTGGATTAATTTCTAATTAAATCGAAATTGGTATCTGATACTCGAAAAAACAAAT
258 CCTTTTTTTTTTGAATTAATTTCTAATTAAATCGAAAAT-GTTTCTGATGCTCGAAAAAACAAAT
**
7700 CCTTTTATCC
322 CCTTAAATCC
* * *
7710 AATGTGGTTGAGATTTGGTTAGTTGAATATAGATATTTCAAGGAGTCTTGGCGCCAAAAATCATG
1 AATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAATGAGTCTTGGCGCCAAAAATCATG
* * * ** *
7775 CAAAACTGAGCCGAGGCCCTAGAACGCGTTTTTAACAAAAAAAACTATG------ATACACGATT
66 CAAAACTGAGCCGAGGCCCCAGAACGCGTTTTTAGCCAAAAACGCGATGTTAAATATACACGATT
* * ** * * * *
7834 TCGTCTATTATTTTGCCAAAACTGACCCGAAAAATTTATCCTCAATTTTTGGCCACAATACTCAT
131 TTGGCTAAAATTTTGCAAAAATTGACCCG-AAAATTTTTCCTCAATTTTTAGCCACAATACTCAT
* * * * * *
7899 AAA-AATATATAATTTAACACCAAAAATATTGAAAGGCTTTTCACGCTTCTACTATCG------G
195 AAAGAATATATAATTCAACGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTCCC
** * * * * * * * * *
7957 TTTTTTTTTCAAATTAATTTATGATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACATAGCT
260 TTTTTTTTTTGAATTAATTTCTAATTAAATCGAAA-ATGTTTCTGATGCTCGAAAAAACAAATCC
8022 TTAAAT-C
324 TTAAATCC
* * * * *
8029 ATATATGACTGAGATTTGATTAGATGAGTATAGATATTTCAA-GAAGT-TTCGGTGCCAAAAATC
1 A-ATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAATG-AGTCTT-GGCGCCAAAAATC
* * * * ** * **
8092 AAGCAAAACAGAGCCGAGGCCTCGGAACGCGTTTTTAGCCAATTA--CTATGATTAACGCAT--A
63 ATGCAAAACTGAGCCGAGGCCCCAGAACGCGTTTTTAGCCAAAAACGCGATG-TTAA-ATATACA
** * * *
8153 CGATTTCCGCTAAAATTTTGTAAAAATTGACCC-AAAATATTTTCCTCAATTTTTTTGCCAAAAT
126 CGATTTTGGCTAAAATTTTGCAAAAATTGACCCGAAAAT-TTTTCCTCAA-TTTTTAGCCACAAT
* * * *
8217 ACTGATAAAGAAAATATAATTCAACGCCAAAAATATT-AGAGGGCTTTTCACCCTTCTAATATCG
189 ACTCATAAAGAATATATAATTCAACGCCAAAAAGATTGA-AGGGCTTTTCACGCTTCTAATATCG
* *
8281 TTTTCCCTATTTTTTTTAGAATTAATTTCTAATTCAAA-GGAAACATGTTTCTGATGCTCTG-AA
253 TTTTCCCT-TTTTTTTTTGAATTAATTTCTAATT-AAATCGAAA-ATGTTTCTGATGCTC-GAAA
* *
8344 AAGCAAATCCCTAAATCC
314 AAACAAATCCTTAAATCC
* * * * *
8362 AATGTGGCTTAGATTTGTTTAGATGAATATAGTTATTTCAATGAATCTTGACGCCAAAAATCATG
1 AATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAATGAGTCTTGGCGCCAAAAATCATG
* * * *
8427 CAAAATTGAGCCAATGCCCCAGAGCGCGTTTTTAGCCAAAAAGCGCGATGCTTAAATATACACGA
66 CAAAACTGAGCCGAGGCCCCAGAACGCGTTTTTAGCCAAAAA-CGCGATG-TTAAATATACACGA
* ** * **
8492 TTTTTGCTAAAATTTTGCAAAAATTGACTAGAAATTTTTTTCCTCAATTTCAAGCCACAAT-CAT
129 TTTTGGCTAAAATTTTGCAAAAATTGACCCGAAA-ATTTTTCCTCAATTTTTAGCCACAATAC-T
* * * *
8556 CATAGAGAATATATAATTAAACGCCAAAAAGATTGAAGGGCTTTTAACGCTTCTAGTATCGTTTT
192 CATAAAGAATATATAATTCAACGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATATCGTTTT
* * * *
8621 CCCTTTTTTTTTTCCGAATTAATTCCTAATTAAATTGAAATTGGTTTCTGATGCTTGAAAAAACA
257 CCCTTTTTTTTTT--GAATTAATTTCTAATTAAATCGAAAAT-GTTTCTGATGCTCGAAAAAACA
*
8686 AATCCTTATATCC
319 AATCCTTAAATCC
* * *
8699 AATGTGGCTGAG-TTTGGTTAGTTGAATATAGATATTTCAAGGAGTCTTGGCGCAAAAAAT-ATT
1 AATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAATGAGTCTTGGCGCCAAAAATCA-T
*** ** * *
8762 GCAAAACTGAGCCG-GGACCTTGGAACGCGTTTTTAGATAAAAAAAAACTGTGATGGTT--A-CT
65 GCAAAACTGAGCCGAGG-CCCCAGAACGCGTTTTTAG----CCAAAAAC-GCGAT-GTTAAATAT
** * * * * * * * *
8823 ACACGATTTCAGCTAAAATTTTGAAAAAACTAACCCGAAATTTTTTTTCTCAAATTTTGGCCACC
123 ACACGATTTTGGCTAAAATTTTGCAAAAATTGACCCGAAA-ATTTTTCCTCAATTTTTAGCCACA
* * * *
8888 ATACTCATAAAAAATATATAA-TCATATGTCAAAAAGATTGAAGGGATTTTCACGCTTCTAATAT
187 ATACTCATAAAGAATATATAATTCA-ACGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATAT
** * * * * * * *
8952 TATTTTTCATTTTTTTTTCGAATTAGTTTCTAATTAAATCGAAATTGGTTTCTGATTCTCAAAAA
251 CGTTTTCCCTTTTTTTTTTGAATTAATTTCTAATTAAATCGAAAAT-GTTTCTGATGCTCGAAAA
*
9017 AACAAATCCTTATATCC
315 AACAAATCCTTAAATCC
*
9034 AATGTGACTGAGATTTGGT
1 AATGTGGCTGAGATTTGGT
9053 CTACACGATT
Statistics
Matches: 2142, Mismatches: 432, Indels: 218
0.77 0.15 0.08
Matches are distributed among these distances:
318 5 0.00
319 5 0.00
320 136 0.06
321 46 0.02
322 66 0.03
323 12 0.01
324 48 0.02
325 46 0.02
326 2 0.00
328 49 0.02
329 158 0.07
330 26 0.01
331 1 0.00
332 136 0.06
333 132 0.06
334 149 0.07
335 167 0.08
336 227 0.11
337 197 0.09
338 14 0.01
339 121 0.06
340 57 0.03
341 216 0.10
342 3 0.00
343 11 0.01
347 51 0.02
348 61 0.03
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.34
Consensus pattern (331 bp):
AATGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAATGAGTCTTGGCGCCAAAAATCATG
CAAAACTGAGCCGAGGCCCCAGAACGCGTTTTTAGCCAAAAACGCGATGTTAAATATACACGATT
TTGGCTAAAATTTTGCAAAAATTGACCCGAAAATTTTTCCTCAATTTTTAGCCACAATACTCATA
AAGAATATATAATTCAACGCCAAAAAGATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTCCCT
TTTTTTTTTGAATTAATTTCTAATTAAATCGAAAATGTTTCTGATGCTCGAAAAAACAAATCCTT
AAATCC
Found at i:9294 original size:263 final size:266
Alignment explanation
Indices: 8804--9312 Score: 575
Period size: 263 Copynumber: 1.9 Consensus size: 266
8794 TTAGATAAAA
* * * *
8804 AAAAACTGTGATGGTTACTACACGATTTCAGCTAAAATTTTGAAAAAACTAACCCGAAATTTTTT
1 AAAAACCGCGATGATTACTACACGATTTCAGCTAAAATTTTGAAAAAACTAACCCGAAAGTTTTT
* * * *** *
8869 TTCTCAAATTTTGGCCACCATACTCATAAAAAATATATAATCATATGTCAAAAAGATTGAAGGGA
66 TCCTCAAATTTTAGCCACCATACTCATAAAAAATATATAATCAAACACCAAAAAGATTGAAAGGA
* * ** * * * * ** *
8934 TTTTCACGCTTCTAATATTATTTTTCATTTTTTTTTCGAATTAGTTTCTAATTAAATCGAAATTG
131 TTTTCACACTTCTAATAGTATTTCCCATTTTTTATTCGAATTAATTCCAAATTAAAGAGAAACTG
* * *
8999 GTTTCTGATTCTCAAAAAAACAAATCCTTATATCCAATGTGACTGAGATTTGGTCTACACGATTT
196 GTTTCTAATGCTCAAAAAAACAAATCCTTATATCCAATGTGACTAAGATTTGGTCTACACGATTT
9064 TTAGCC
261 TTAGCC
* * * *
9070 AAAAACCGCGATGATTACTTCACGATTTCAGCTAAAATTTTGCAAAAATTGACCCGAAAGTTTTT
1 AAAAACCGCGATGATTACTACACGATTTCAGCTAAAATTTTGAAAAAACTAACCCGAAAGTTTTT
* *
9135 TCCTCAATTTTTAGCCA-CA-A-TCATAAAGAAA-ATATAATTAAACACCAAAAAGATTGAAAGG
66 TCCTCAAATTTTAGCCACCATACTCATAAA-AAATATATAATCAAACACCAAAAAGATTGAAAGG
* *
9196 CTTTTCACAC-T-T-ATCGT-TTTCCCTATTTTTTAATTCGAATTAATTCCAAATTAAAGAGAAA
130 ATTTTCACACTTCTAATAGTATTTCCC-ATTTTTT-ATTCGAATTAATTCCAAATTAAAGAGAAA
* * ** *
9257 CTGGTTTTTTCAATGCTCGAAAAAATGAATCCTTATATCCAATGTGGCTAAGATTT
193 CTGG-TTTCT-AATGCTCAAAAAAACAAATCCTTATATCCAATGTGACTAAGATTT
9313 AGTTTGTGGA
Statistics
Matches: 200, Mismatches: 38, Indels: 13
0.80 0.15 0.05
Matches are distributed among these distances:
259 4 0.02
260 10 0.05
261 27 0.14
262 5 0.03
263 77 0.38
264 4 0.02
265 2 0.01
266 71 0.35
ACGTcount: A:0.36, C:0.17, G:0.12, T:0.36
Consensus pattern (266 bp):
AAAAACCGCGATGATTACTACACGATTTCAGCTAAAATTTTGAAAAAACTAACCCGAAAGTTTTT
TCCTCAAATTTTAGCCACCATACTCATAAAAAATATATAATCAAACACCAAAAAGATTGAAAGGA
TTTTCACACTTCTAATAGTATTTCCCATTTTTTATTCGAATTAATTCCAAATTAAAGAGAAACTG
GTTTCTAATGCTCAAAAAAACAAATCCTTATATCCAATGTGACTAAGATTTGGTCTACACGATTT
TTAGCC
Found at i:10678 original size:334 final size:332
Alignment explanation
Indices: 9062--10737 Score: 1852
Period size: 333 Copynumber: 5.1 Consensus size: 332
9052 TCTACACGAT
* * * * * * *
9062 TTTTAGCCAAAAACCGCGATGATTACTTCACGATTTCAGCTAAAATTTTGCAAAAATTGACCCGA
1 TTTTAGCCAAAAACTGTGATGGTTACTACATGATTTCAGCTAAAATTTTGCAAAAACTGACCTGA
*
9127 AAGTTTTTTCCTCAATTTTTAGCCAC---AATCATAAAGAAA-ATATAATTAAACACCAAAAAGA
66 AAGTTTTTTCCTCAATTTTTAGCCACAATAATCATAAA-AAATATATAATTCAACACCAAAAAGA
* * * * * *
9188 TTGAAAGGCTTTTCA--C-ACT--TATCGTTTTCCCTATTTTTTAATTCGAATTAATTCCAAATT
130 TTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCCTATATTTT--TCCGAATTAATTCCTAATT
** * ** *
9248 AAAGAGAAACTGGTTTTTTCAATGCTCGAAAAAATGAATCCTTATATCCAATGTGGCTAAGATTT
193 AAATCGAAACTGG-TTTCT-AATGCTCGAAAAAACAAATCCTTATATCCAATGTGGCTGAGATTT
* * * *
9313 AGTT-TGTGGAATATAGATATTTCAAGGAGTCTTGGCGCCAAAAATCATGCAAAAATGAGCCGGG
256 GGTTAGGT-GAATATAGATATTTCAAGGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGACGGG
* *
9377 TG-CTCGTAATGC-
320 -GCCTCGGAACGCG
* * * * *
9389 TCTTTAGCCAAAAACTGAGATGGTTA-TCACATGATTTCATCTAAAATTTTGTAAAAATTGACAT
1 T-TTTAGCCAAAAACTGTGATGGTTACT-ACATGATTTCAGCTAAAATTTTGCAAAAACTGACCT
* * * * *
9453 GAAAGTTTTTTCCTCAATTTTTAGCCACAATAATCATAGAGAATAAATAATTAAACACCAAAAAT
64 GAAAGTTTTTTCCTCAATTTTTAGCCACAATAATCATAAAAAATATATAATTCAACACCAAAAAG
* *
9518 ATTGAAGGGCTTTTCATGCTTCTAATATAG---TT--T-T-TTTTTCCGAATTAATTCCTAATTA
129 ATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCCTATATTTTTCCGAATTAATTCCTAATTA
* * * * *
9576 AATCGAAATTGGTTTTCAAAAGCTCCAAAAAACAAATCCTTATATGCAATGTGGC-GAGATTTGG
194 AATCGAAACTGG-TTTCTAATGCTCGAAAAAACAAATCCTTATATCCAATGTGGCTGAGATTTGG
* * *
9640 TT-TGTGGAATATAGATATTTCAAGGATTCTTGGCGCC-AAAATCATGCAAAACTGAGACGGGCC
258 TTAGGT-GAATATAGATATTTCAAGGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGACGGGGC
9703 CTCGGAACGCG
322 CTCGGAACGCG
* * *
9714 TTTTCAGCAAAAAACTATGAAT-GTTACTACATGATTTCAGCAAAAATTTTGCAAAAACTGA-CT
1 TTTT-AGCCAAAAACTGTG-ATGGTTACTACATGATTTCAGCTAAAATTTTGCAAAAACTGACCT
** * * **
9777 CGAAAAATTTTTCCTCAATTTTTGGCCACAATAATCATAAAAAATATATAATTCTATGCCAAAAA
64 -GAAAGTTTTTTCCTCAATTTTTAGCCACAATAATCATAAAAAATATATAATTCAACACCAAAAA
* * * * *
9842 GATTGAAGGGCTTCTCACGCTTCTAATATTGTTTTTCCTTTTTTTTTCCCGAATTAGTTTCC-AA
128 GATTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCCTATATTTTT-CCGAATTA-ATTCCTAA
* * * * *
9906 TTAAATCGAAACCGGTTTCTGATGCTCG-AAAAACAAATCCTTATATGCAATGTGGTTGAGATTC
191 TTAAATCGAAACTGGTTTCTAATGCTCGAAAAAACAAATCCTTATATCCAATGTGGCTGAGATTT
* * *
9970 GGTTAGTTGAATATAGATATTTCAAGGAGTCTTGACGCCAAAAATCATGCAAAAATGAG-CTGGG
256 GGTTAGGTGAATATAGATATTTCAAGGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGAC-GGG
* *
10034 TCCTCGGAACGCT
320 GCCTCGGAACGCG
* * * * *
10047 TTTTAGCCAAAAACCGCGATGGTTACTACACGATTTCAACTAAAATTTTGC-AAAACTTGACCCG
1 TTTTAGCCAAAAACTGTGATGGTTACTACATGATTTCAGCTAAAATTTTGCAAAAAC-TGACCTG
* * * *
10111 AAAGTTTTTTTCCTCAATTTTTAGCCATAATAATCATAGAGAATATATAA-TCAAACACGAAAAA
65 AAAG-TTTTTTCCTCAATTTTTAGCCACAATAATCATAAAAAATATATAATTC-AACACCAAAAA
* * **
10175 GATTGAAGGGCATTTCACGCTT-TCAATATCGTTTTCCCTA-ACTTTTTCAAAATTAATTCCTAA
128 GATTGAAGGGCTTTTCACGCTTCT-AATATCGTTTTTCCTATA-TTTTTCCGAATTAATTCCTAA
* *
10238 TTAAATCGAAACTGGTTTTTGATGCTCGAAAAAACAAATCCTTATATCCAATGTGGCTGAGATTT
191 TTAAATCGAAACTGGTTTCTAATGCTCGAAAAAACAAATCCTTATATCCAATGTGGCTGAGATTT
* * * * * * * *
10303 AGTTAGTTAAATATAGATATCTCAAGGAGTCTTGACGCCAAAAATTA-GGAAAAGCTGAGTCGGG
256 GGTTAGGTGAATATAGATATTTCAAGGAGTCTTGGCGCCAAAAATCATGCAAAA-CTGAGACGGG
*
10367 GCCCCGGAACGCG
320 GCCTCGGAACGCG
* * * * *
10380 ATTTTAGTCAAAAACTGTGATGGTTACAACCTGATTTCGGCTAAAATTTTGCGAAAACTGACCTG
1 -TTTTAGCCAAAAACTGTGATGGTTACTACATGATTTCAGCTAAAATTTTGCAAAAACTGACCTG
* * * *
10445 AAAGTATTTTCCTCAATTTTTTGCCACAATACTAATAAAAAATATATAATTCAACACCAAAAAGA
65 AAAGTTTTTTCCTCAATTTTTAGCCACAATAATCATAAAAAATATATAATTCAACACCAAAAAGA
* *
10510 TTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCCTATATATTTTCTGAATTAATTTCTAATTA
130 TTGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCCTATAT-TTTTCCGAATTAATTCCTAATTA
* *
10575 AATCGAAACTGGTTTCTAATGTTCGAAAAAACAATTCCTTATATCCAATGTGGCTGAGATTTGGT
194 AATCGAAACTGGTTTCTAATGCTCGAAAAAACAAATCCTTATATCCAATGTGGCTGAGATTTGGT
* * * * * *
10640 TAGGTGAATATAAATATTTCAAGAAATATGGGCGCCAAAAATCATGCAAAACTGAGACGGGACCT
259 TAGGTGAATATAGATATTTCAAGGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGACGGGGCCT
*
10705 CGAAACGCG
324 CGGAACGCG
*
10714 TTTTTAGCCAAATACTGTGATGGT
1 -TTTTAGCCAAAAACTGTGATGGT
10738 ACGGCTAAAT
Statistics
Matches: 1140, Mismatches: 161, Indels: 89
0.82 0.12 0.06
Matches are distributed among these distances:
324 34 0.03
325 169 0.15
326 35 0.03
327 33 0.03
328 81 0.07
329 4 0.00
330 4 0.00
331 82 0.07
332 140 0.12
333 326 0.29
334 218 0.19
335 10 0.01
336 4 0.00
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.33
Consensus pattern (332 bp):
TTTTAGCCAAAAACTGTGATGGTTACTACATGATTTCAGCTAAAATTTTGCAAAAACTGACCTGA
AAGTTTTTTCCTCAATTTTTAGCCACAATAATCATAAAAAATATATAATTCAACACCAAAAAGAT
TGAAGGGCTTTTCACGCTTCTAATATCGTTTTTCCTATATTTTTCCGAATTAATTCCTAATTAAA
TCGAAACTGGTTTCTAATGCTCGAAAAAACAAATCCTTATATCCAATGTGGCTGAGATTTGGTTA
GGTGAATATAGATATTTCAAGGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGACGGGGCCTCG
GAACGCG
Done.