Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019248.1 Corchorus olitorius cultivar O-4 contig19281, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7214
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33


Found at i:2447 original size:13 final size:13

Alignment explanation


    Indices: 2431--2455  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

       2421 ATATCATTAT

                         
       2431 GCTATATATATAA
          1 GCTATATATATAA

                        
       2444 GCTATATATATA
          1 GCTATATATATA

       2456 CTGATAGAAA


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.44, C:0.08, G:0.08, T:0.40


Consensus pattern (13 bp):   
GCTATATATATAA

Found at i:4629 original size:27 final size:27

Alignment explanation


    Indices: 4582--4651  Score: 88
    Period size: 27  Copynumber: 2.6  Consensus size: 27

       4572 GGAGAAGAGG

                      **    *          
       4582 AAAGATAAGATGGTTTTTGATAG-AAA
          1 AAAGATAAGACAGTTTGTGATAGAAAA

                    *                   
       4608 AAAGATAATACAAGTTTGTGATAGAAAA
          1 AAAGATAAGAC-AGTTTGTGATAGAAAA

                            
       4636 AAAGATAAGACAGTTT
          1 AAAGATAAGACAGTTT

       4652 AGGGATTTAT


Statistics
Matches: 37,  Mismatches: 5, Indels: 3
        0.82            0.11        0.07

Matches are distributed among these distances:
  26    9  0.24
  27   15  0.41
  28   13  0.35

ACGTcount: A:0.50, C:0.03, G:0.20, T:0.27


Consensus pattern (27 bp):   
AAAGATAAGACAGTTTGTGATAGAAAA
Done.