Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019252.1 Corchorus olitorius cultivar O-4 contig19285, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3638
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30


Found at i:2956 original size:21 final size:21

Alignment explanation


    Indices: 2932--3004  Score: 65
    Period size: 21  Copynumber: 3.4  Consensus size: 21

       2922 GGCTTGGAAT

                                 
       2932 GGTGATGGCACGGGCATGGCC
          1 GGTGATGGCACGGGCATGGCC

                *          * **  
       2953 GGTGGTGGCACGGGCTTAACC
          1 GGTGATGGCACGGGCATGGCC

                *     *    *      
       2974 GGTGGTGGCATGGTGAATGGCC
          1 GGTGATGGCACGG-GCATGGCC

               *     
       2996 GGTAATGGC
          1 GGTGATGGC

       3005 TTGGTAGTGG


Statistics
Matches: 40,  Mismatches: 11, Indels: 1
        0.77            0.21        0.02

Matches are distributed among these distances:
  21   29  0.73
  22   11  0.28

ACGTcount: A:0.15, C:0.19, G:0.47, T:0.19


Consensus pattern (21 bp):   
GGTGATGGCACGGGCATGGCC
Done.