Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019253.1 Corchorus olitorius cultivar O-4 contig19286, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1851
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32


Found at i:1841 original size:15 final size:15

Alignment explanation


    Indices: 1821--1851  Score: 53
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       1811 ACAGAGATTG

                   *       
       1821 ACAGAAAGCAATTAA
          1 ACAGAAAACAATTAA

                           
       1836 ACAGAAAACAATTAA
          1 ACAGAAAACAATTAA

             
       1851 A
          1 A


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.65, C:0.13, G:0.10, T:0.13


Consensus pattern (15 bp):   
ACAGAAAACAATTAA
Done.