Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019257.1 Corchorus olitorius cultivar O-4 contig19290, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87280

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
729--760
14
2.1
16
88
11
50
40
6
3
50
1.43
13208--13267
1
60.0
1
79
0
66
90
10
0
0
0.47
13210--13266
8
6.9
8
94
6
96
89
10
0
0
0.49
13209--13270
9
7.2
9
96
3
103
88
11
0
0
0.51
13210--13266
17
3.4
17
95
4
107
89
10
0
0
0.49
16832--17028
65
3.0
66
86
5
260
21
27
29
21
1.98
17051--17311
48
5.4
48
84
6
346
12
24
28
34
1.92
17051--17311
73
3.6
72
88
4
380
12
24
28
34
1.92
17051--17312
25
10.7
25
86
5
367
12
24
28
33
1.93
17522--17837
100
3.2
100
91
0
506
19
26
33
20
1.97
17608--17762
50
3.1
49
64
20
113
20
26
34
18
1.96
17645--17994
180
1.9
179
93
1
594
20
24
34
20
1.96
17746--17913
80
2.1
80
95
0
300
20
24
35
20
1.96
28848--28898
24
2.0
26
88
11
79
23
7
31
37
1.83
35124--35150
13
2.1
13
100
0
54
85
14
0
0
0.61
45962--46001
21
1.9
21
85
10
55
47
5
20
27
1.70
60236--60265
8
3.8
8
95
0
51
56
0
0
43
0.99
60428--60457
2
15.5
2
93
6
53
50
0
0
50
1.00
60153--60532
192
2.0
192
90
4
604
33
15
10
40
1.82
60605--60636
16
2.0
16
100
0
64
62
12
0
25
1.30
62165--62213
25
2.0
25
95
0
89
34
18
32
14
1.91
62462--62487
2
13.0
2
100
0
52
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63171--63351
92
1.9
95
85
9
255
41
17
14
25
1.88
69137--69162
2
13.0
2
100
0
52
50
0
0
50
1.00
68943--69368
209
2.0
209
87
1
613
36
15
16
30
1.91
85302--85404
49
2.1
49
96
0
188
35
18
19
26
1.95

Tables:   1

The End!