Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019272.1 Corchorus olitorius cultivar O-4 contig19305, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 36247
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.32


Found at i:12851 original size:55 final size:55

Alignment explanation


    Indices: 12787--12897  Score: 213
    Period size: 55  Copynumber: 2.0  Consensus size: 55

      12777 TAATTACTTA

                               *                                   
      12787 ACTTGAATGAATTCAAAATTAACAACCAATGAGTTCTTCCAAATTATAATTATCC
          1 ACTTGAATGAATTCAAAATAAACAACCAATGAGTTCTTCCAAATTATAATTATCC

                                                                   
      12842 ACTTGAATGAATTCAAAATAAACAACCAATGAGTTCTTCCAAATTATAATTATCC
          1 ACTTGAATGAATTCAAAATAAACAACCAATGAGTTCTTCCAAATTATAATTATCC

             
      12897 A
          1 A

      12898 AGGCAAGAAC


Statistics
Matches: 55,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  55   55  1.00

ACGTcount: A:0.43, C:0.18, G:0.07, T:0.32


Consensus pattern (55 bp):   
ACTTGAATGAATTCAAAATAAACAACCAATGAGTTCTTCCAAATTATAATTATCC
Done.