Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019274.1 Corchorus olitorius cultivar O-4 contig19307, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6048
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.32


Found at i:880 original size:2 final size:2

Alignment explanation


    Indices: 875--911  Score: 74
    Period size: 2  Copynumber: 18.5  Consensus size: 2

        865 GCATGCTTTG

                                                                   
        875 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

        912 GCAACAATAA


Statistics
Matches: 35,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   35  1.00

ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51


Consensus pattern (2 bp):   
TA

Found at i:1989 original size:2 final size:2

Alignment explanation


    Indices: 1982--2015  Score: 68
    Period size: 2  Copynumber: 17.0  Consensus size: 2

       1972 ACTTAAAAAC

                                                              
       1982 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

       2016 GCAGACAGGA


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   32  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Done.