Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019275.1 Corchorus olitorius cultivar O-4 contig19308, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43267

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2384--2525
2
75.0
2
67
18
54
48
1
2
47
1.22
2451--2526
28
2.6
30
87
10
113
55
0
0
44
0.99
2451--2527
24
3.0
24
80
12
66
55
0
0
44
0.99
3052--3346
106
2.8
104
85
8
404
41
9
6
41
1.64
4649--4844
98
2.0
98
100
0
392
41
13
15
29
1.85
5739--5779
16
2.5
16
96
4
73
56
7
0
36
1.27
15150--15175
2
13.0
2
100
0
52
50
0
0
50
1.00
27630--27660
1
31.0
1
100
0
62
100
0
0
0
0.00
34619--34844
31
7.5
31
61
16
98
35
16
18
29
1.93
34714--34812
29
3.3
29
64
10
83
36
14
19
30
1.91
34623--34843
60
3.7
60
93
1
345
36
16
18
28
1.92
34916--35017
29
3.4
29
70
17
84
29
19
17
33
1.95
34888--35049
60
2.7
60
90
3
238
27
18
17
36
1.94
34888--35052
31
5.5
30
68
13
106
27
18
18
35
1.94
41835--41903
30
2.3
30
90
5
104
34
36
17
11
1.86
42356--42445
33
2.7
33
86
3
110
36
6
21
35
1.80

Tables:   1

The End!