Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019277.1 Corchorus olitorius cultivar O-4 contig19310, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9957
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.33

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:6307 original size:86 final size:86

Alignment explanation


    Indices: 6067--6282  Score: 414
    Period size: 86  Copynumber: 2.5  Consensus size: 86

       6057 ATAATCAATA

                       *                                                     
       6067 AATAATAATGAGAATATTTTCTAAATCTTGCCAAATTGTGGAAGGTTTAGGATATATTTTAAGAA
          1 AATAATAATGATAATATTTTCTAAATCTTGCCAAATTGTGGAAGGTTTAGGATATATTTTAAGAA

                              *  
       6132 ATAAATAAATCATAAAGATTG
         66 ATAAATAAATCATAAAGAATG

                                                                             
       6153 AATAATAATGATAATATTTTCTAAATCTTGCCAAATTGTGGAAGGTTTAGGATATATTTTAAGAA
          1 AATAATAATGATAATATTTTCTAAATCTTGCCAAATTGTGGAAGGTTTAGGATATATTTTAAGAA

                                 
       6218 ATAAATAAATCATAAAGAATG
         66 ATAAATAAATCATAAAGAATG

                                                        
       6239 AATAATAATGATAATATTTTCTAAATCTTGCCAAATTGTGGAAG
          1 AATAATAATGATAATATTTTCTAAATCTTGCCAAATTGTGGAAG

       6283 ATGTAGAAAT


Statistics
Matches: 128,  Mismatches: 2, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  86  128  1.00

ACGTcount: A:0.44, C:0.06, G:0.14, T:0.35


Consensus pattern (86 bp):   
AATAATAATGATAATATTTTCTAAATCTTGCCAAATTGTGGAAGGTTTAGGATATATTTTAAGAA
ATAAATAAATCATAAAGAATG
Done.