Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019280.1 Corchorus olitorius cultivar O-4 contig19313, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26837

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
938--1021
45
1.9
43
87
0
105
38
22
3
35
1.72
4556--4590
16
2.2
16
100
0
70
14
11
31
42
1.81
6346--6428
22
3.8
21
73
17
64
57
1
2
38
1.19
6348--6396
25
2.0
25
84
8
64
59
0
0
40
0.98
8086--8324
133
1.8
127
85
8
329
51
1
10
35
1.47
12477--12510
17
2.0
17
100
0
68
29
17
11
41
1.85
13225--13265
10
4.2
10
82
14
50
34
0
0
65
0.93
18916--18954
18
2.2
18
100
0
78
35
5
23
35
1.77
19639--19805
31
5.5
30
66
18
96
28
19
18
33
1.95
19640--19803
60
2.7
60
85
0
238
28
19
18
33
1.95
21360--21686
43
7.8
43
81
10
399
42
25
11
20
1.85
21360--21686
84
3.9
84
93
1
552
42
25
11
20
1.85
21795--21846
2
26.5
2
88
3
79
48
3
0
48
1.20
24515--24573
22
2.5
24
78
15
61
23
22
5
49
1.70
26643--26682
15
2.6
16
88
4
55
62
12
10
15
1.54

Tables:   1

The End!