genome.fa.s19283.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019283.1 Corchorus olitorius cultivar O-4 contig19316, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  217260

Tables:   1   

This is table  1  of  1  ( 89 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2745--2788	12	3.7	12	100	0	88	0	15	31	52	1.44
9124--9173	22	2.3	22	96	0	91	42	16	6	36	1.72
9876--9918	17	2.6	16	85	10	59	34	20	23	20	1.96
17473--17546	10	8.0	10	70	19	54	56	1	0	41	1.07
17485--17542	22	2.7	21	80	17	73	60	1	0	37	1.07
17473--17540	7	9.6	7	75	20	61	55	1	0	42	1.08
17506--17554	25	2.0	25	91	0	80	65	0	0	34	0.93
24466--24506	20	1.9	21	85	14	57	65	4	0	29	1.13
28050--28092	22	2.0	22	86	4	61	60	6	2	30	1.35
31022--31054	17	1.9	17	93	0	57	57	15	18	9	1.63
37077--37105	2	14.5	2	100	0	58	0	51	0	48	1.00
45652--45765	41	2.8	39	85	6	147	39	22	24	13	1.90
47543--47662	40	3.0	40	93	2	197	34	21	26	17	1.96
47672--48189	43	11.9	43	85	4	610	37	16	24	20	1.93
47672--48189	174	3.0	172	85	5	691	37	16	24	20	1.93
50617--50686	34	2.1	34	91	0	113	5	15	20	58	1.57
56547--56595	2	25.0	2	88	12	75	51	0	2	46	1.12
57253--57407	69	2.2	69	85	4	213	27	18	28	25	1.98
58061--58100	20	2.0	20	95	0	71	42	10	12	35	1.76
59331--59367	15	2.5	15	90	0	56	37	13	8	40	1.74
60570--60887	154	2.0	155	90	3	503	34	16	22	27	1.95
62066--62385	40	8.0	40	85	3	387	37	21	25	15	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62401--62909	43	11.7	43	86	5	657	35	17	26	20	1.94
66620--66649	2	15.0	2	100	0	60	50	0	0	50	1.00
69364--69400	12	3.1	12	100	0	74	64	8	18	8	1.45
70992--71036	21	2.1	21	83	0	54	15	17	31	35	1.92
72072--72102	3	10.3	3	100	0	62	32	0	0	67	0.91
72100--72126	2	13.5	2	100	0	54	48	0	0	51	1.00
79656--79690	2	17.5	2	100	0	70	51	0	0	48	1.00
80257--80402	28	5.0	28	80	7	148	35	31	14	18	1.91
80264--80422	31	5.4	30	80	7	157	35	32	13	17	1.89
80262--80397	59	2.3	59	89	0	209	36	31	13	18	1.90
83163--83394	87	2.6	90	83	6	292	30	25	18	26	1.98
83163--83394	92	2.6	88	84	4	288	30	25	18	26	1.98
84678--84707	14	2.2	13	94	5	51	6	50	0	43	1.28
84876--84923	25	1.9	25	95	0	87	22	25	31	20	1.98
84823--84941	15	8.6	15	70	17	60	21	28	28	21	1.99
84860--84961	40	2.5	40	80	0	114	19	26	31	22	1.98
86526--86581	21	2.7	21	85	0	67	12	16	7	64	1.48
94050--94177	30	4.3	30	89	2	186	19	32	21	27	1.97
95659--95700	22	2.0	22	90	4	68	40	23	0	35	1.55
95938--95986	19	2.6	19	83	6	64	59	0	16	24	1.37
97180--97266	42	2.1	42	100	0	174	34	9	31	25	1.87
98387--98576	98	1.9	98	91	0	308	30	7	6	55	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98414--98568	50	3.1	50	65	7	127	33	7	5	54	1.50
102277--102337	34	1.9	32	87	12	90	26	29	14	29	1.95
105108--105166	30	2.0	30	96	0	109	45	3	25	25	1.69
106914--107135	110	2.0	110	100	0	444	29	9	25	36	1.86
113659--114445	393	2.0	393	97	0	1493	33	19	18	28	1.95
118172--118240	29	2.3	31	78	12	81	42	18	15	23	1.89
120219--120261	16	2.7	16	77	0	50	69	0	9	20	1.15
123137--123192	2	27.0	2	92	7	94	48	3	0	48	1.19
124853--125169	168	1.9	168	88	2	476	42	8	11	37	1.71
125014--125536	142	3.8	142	79	9	612	44	10	10	34	1.74
125264--125500	130	1.8	129	86	2	343	45	13	10	30	1.77
125399--125866	165	2.8	165	89	3	708	43	10	10	35	1.73
125770--126084	174	1.8	175	88	2	481	44	12	10	33	1.76
127628--127657	14	2.1	14	93	0	51	13	10	6	70	1.34
129099--129173	8	9.0	8	72	13	62	40	5	10	44	1.62
129108--129156	12	4.2	12	76	2	55	38	4	12	44	1.61
129084--129180	36	2.8	36	84	7	139	39	6	10	44	1.64
136513--136557	21	2.1	21	91	0	72	26	11	22	40	1.87
136727--136766	21	1.9	21	94	0	71	15	37	30	17	1.90
138019--138058	15	2.6	16	96	4	73	67	12	7	12	1.41
140904--140970	30	2.2	30	84	5	82	34	17	5	41	1.74
147930--148006	29	2.7	29	83	2	93	12	12	35	38	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
149555--149602	21	2.3	21	82	7	62	33	2	10	54	1.46
150559--150696	68	2.0	68	100	0	276	31	17	23	27	1.97
152554--152589	19	1.9	18	88	5	54	27	22	8	41	1.82
154634--154672	20	2.0	20	90	5	62	25	38	2	33	1.70
154722--154751	2	15.0	2	100	0	60	0	50	0	50	1.00
155893--155941	24	2.0	25	88	4	73	63	10	22	4	1.43
156101--156132	15	2.1	15	94	0	55	59	0	28	12	1.34
160158--160193	19	1.9	18	88	5	54	0	38	2	58	1.13
168431--168473	22	2.0	22	85	0	59	20	32	25	20	1.97
173757--173799	21	2.0	21	95	0	77	23	34	23	18	1.96
177198--177242	13	3.6	12	91	8	72	11	0	0	88	0.50
177197--177242	20	2.3	19	89	10	74	10	0	0	89	0.50
191722--191776	27	2.0	27	96	0	101	29	21	5	43	1.75
197408--197485	38	2.1	38	82	4	95	25	24	6	43	1.78
199829--199957	65	2.0	63	93	3	222	40	4	15	39	1.68
205079--205171	46	2.0	46	100	0	186	15	33	12	38	1.85
205082--205154	22	3.2	22	66	27	62	15	32	13	38	1.86
209007--209055	25	2.0	25	92	8	82	40	26	8	24	1.83
209016--209064	25	2.0	25	87	0	71	44	24	10	20	1.82
212823--212908	44	1.9	45	88	2	129	54	6	10	27	1.60
213076--213110	2	18.0	2	94	5	63	51	0	0	48	1.00
213466--213556	42	2.2	42	90	5	141	40	18	4	36	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
214574--214855	107	2.8	99	80	10	306	40	8	10	40	1.70

Tables:   1

The End!