Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019284.1 Corchorus olitorius cultivar O-4 contig19317, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2798
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.32


Found at i:1325 original size:21 final size:21

Alignment explanation


    Indices: 1298--1344  Score: 67
    Period size: 22  Copynumber: 2.2  Consensus size: 21

       1288 CTAAGATGCA

                  *  *            
       1298 TAAAAAAAATAAATCTTAAATC
          1 TAAAAACAAGAAAT-TTAAATC

                                 
       1320 TAAAAACAAGAAATTTAAATC
          1 TAAAAACAAGAAATTTAAATC

                
       1341 TAAA
          1 TAAA

       1345 CCTAAATTGG


Statistics
Matches: 23,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  21   11  0.48
  22   12  0.52

ACGTcount: A:0.64, C:0.09, G:0.02, T:0.26


Consensus pattern (21 bp):   
TAAAAACAAGAAATTTAAATC
Done.