Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019286.1 Corchorus olitorius cultivar O-4 contig19319, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52999

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3415--3454
18
2.2
19
86
4
55
27
15
17
40
1.89
7369--7428
17
3.5
17
76
17
54
36
10
35
18
1.84
9583--9653
21
3.4
21
98
0
133
28
16
28
26
1.97
10701--10735
15
2.3
15
95
0
61
17
8
28
45
1.77
23830--24607
393
2.0
393
97
1
1461
31
12
16
39
1.86
29493--29523
16
1.9
16
93
0
53
54
19
6
19
1.65
33517--33581
31
2.2
29
86
5
85
27
23
13
35
1.93
35158--35243
45
1.9
44
81
11
104
65
8
8
18
1.44
36920--37049
65
2.0
65
92
0
215
21
29
26
23
1.99
37243--37334
21
4.4
21
90
2
141
26
26
17
30
1.97
39173--39277
33
3.2
33
82
2
122
45
20
7
25
1.78
39855--39886
15
2.1
15
94
0
55
18
6
28
46
1.73
41555--41684
65
2.0
65
93
0
224
21
30
26
21
1.98
41880--42011
21
6.3
21
93
1
221
25
26
18
29
1.98
43150--43213
31
2.0
32
93
3
112
39
14
12
34
1.83
48547--48585
2
20.5
2
89
10
64
48
0
0
51
1.00
48547--48583
15
2.5
15
90
0
65
48
0
0
51
1.00

Tables:   1

The End!