Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019287.1 Corchorus olitorius cultivar O-4 contig19320, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70484

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3051--3104
21
2.6
21
93
0
90
16
48
22
12
1.80
3460--3489
15
2.1
14
93
6
51
13
16
6
63
1.50
6348--6389
15
2.7
15
92
3
66
11
9
14
64
1.50
13372--13445
25
3.0
25
93
0
121
36
17
31
14
1.90
14315--14388
25
3.0
25
100
0
148
35
20
32
12
1.89
15285--15384
30
3.3
30
68
15
96
29
12
31
28
1.92
15315--15416
32
3.2
32
69
15
104
29
16
29
24
1.97
15282--15417
62
2.2
62
95
0
254
30
14
28
26
1.95
15306--15406
33
3.2
33
68
16
104
29
14
25
29
1.95
17112--17153
16
2.6
17
85
7
52
30
47
11
9
1.72
18946--18981
18
2.0
18
88
0
54
11
13
25
50
1.75
19185--19384
30
6.9
30
87
7
272
34
18
18
29
1.94
19525--19560
16
2.2
16
95
0
63
33
2
30
33
1.72
23924--23955
15
2.3
15
89
10
50
65
0
3
31
1.08
25706--25737
2
16.0
2
100
0
64
50
0
0
50
1.00
26612--26637
7
3.7
7
100
0
52
23
0
30
46
1.53
29521--29560
21
2.0
21
90
5
64
27
2
15
55
1.53
40337--40369
16
2.1
16
100
0
66
21
36
6
36
1.78
57875--57916
19
2.2
19
91
0
66
50
9
16
23
1.75
58265--58306
19
2.2
20
82
4
50
4
35
0
59
1.19
66122--66146
11
2.3
11
100
0
50
60
12
8
20
1.57

Tables:   1

The End!