Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019288.1 Corchorus olitorius cultivar O-4 contig19321, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35323

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2469--2505
14
2.6
14
100
0
74
43
0
16
40
1.48
2725--2772
25
1.9
25
95
0
87
39
10
18
31
1.85
2912--3009
27
3.6
28
76
6
103
42
22
14
20
1.88
2912--3010
26
3.7
27
76
8
103
42
23
14
20
1.88
3315--3737
50
8.5
50
93
0
720
27
11
28
31
1.92
4311--4512
50
4.0
50
86
0
278
31
15
18
34
1.92
4311--4508
100
2.0
100
90
0
315
31
15
19
33
1.93
5089--5131
14
3.0
14
86
13
61
16
0
13
69
1.19
5093--5129
17
2.2
16
95
4
65
13
0
10
75
1.04
5511--5547
14
2.4
16
86
8
51
13
16
0
70
1.17
14094--14127
16
2.1
16
100
0
68
52
23
0
23
1.47
14822--14859
14
2.7
14
84
12
51
55
2
0
42
1.14
14823--14867
22
2.0
22
87
8
65
51
2
0
46
1.13
15381--15430
25
2.0
25
92
0
82
36
10
22
32
1.87
15570--15668
26
3.7
27
78
8
103
43
23
14
19
1.87
18771--18880
39
2.9
39
86
2
161
24
18
34
22
1.96
18910--18959
6
8.3
6
91
8
84
16
2
32
50
1.56
21214--21506
65
4.5
64
84
10
226
40
13
21
24
1.89
21280--21504
65
3.5
65
90
4
294
40
12
21
25
1.89
25856--25949
43
2.1
45
84
7
120
36
14
24
24
1.93
25933--26443
22
23.0
22
74
13
242
43
4
21
29
1.73
25943--26666
14
49.9
14
66
23
148
44
4
20
29
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25933--26699
44
17.5
44
73
16
417
44
4
20
29
1.72
25943--26699
8
102.7
7
66
21
131
44
4
21
29
1.71
26077--26666
58
9.9
58
70
18
255
44
4
21
30
1.72
26201--26378
50
3.7
49
74
14
172
42
5
22
29
1.76
26189--26378
72
2.6
72
82
5
215
42
5
23
28
1.75
26369--26443
23
3.3
23
70
10
64
38
4
25
32
1.74
26454--26600
22
6.6
23
75
13
89
46
4
18
30
1.67
26518--26699
22
8.0
22
76
7
116
46
2
20
30
1.65
27880--27920
4
10.8
4
84
5
50
0
14
0
85
0.60
27878--27920
12
3.8
12
90
9
72
0
13
0
86
0.58
31794--31976
29
6.5
28
77
13
180
20
15
21
41
1.90
32115--32162
25
1.9
25
95
0
87
31
18
10
39
1.85

Tables:   1

The End!