Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019289.1 Corchorus olitorius cultivar O-4 contig19322, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37720

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1878--2112
65
3.6
66
80
12
236
39
13
21
25
1.90
6089--6114
2
13.0
2
100
0
52
50
0
0
50
1.00
7822--7967
38
3.8
38
87
5
197
23
17
33
24
1.96
7997--8028
6
5.3
6
100
0
64
15
0
34
50
1.45
9740--9787
21
2.3
21
100
0
96
18
12
18
50
1.78
17132--17174
13
3.2
13
81
12
52
2
20
0
76
0.89
17132--17178
23
2.1
22
92
4
76
4
19
0
76
0.95
20853--20924
36
2.0
36
97
0
135
50
18
22
9
1.76
21667--21718
26
2.0
26
88
7
79
44
11
19
25
1.84
23054--23125
31
2.3
31
100
0
144
47
25
15
12
1.80
28010--28042
2
17.0
2
93
6
59
48
0
0
51
1.00
30885--30927
14
3.0
15
80
19
56
39
2
13
44
1.57
31990--32034
14
3.5
12
84
9
54
31
0
11
57
1.33
32392--32435
21
2.1
21
100
0
88
34
18
25
22
1.96
34359--34396
16
2.3
17
90
4
60
68
7
13
10
1.39

Tables:   1

The End!