Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019291.1 Corchorus olitorius cultivar O-4 contig19324, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  9560

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1013--1059
26
1.9
24
87
12
69
27
27
4
40
1.75
2396--4769
154
15.4
154
90
1
3490
41
18
18
21
1.91
2396--5835
308
11.1
308
82
7
4040
41
19
18
21
1.91
2396--5835
462
7.4
461
85
5
4619
41
19
18
21
1.91
4731--4805
36
2.1
36
94
0
132
38
21
12
28
1.89
4577--4959
190
2.0
190
90
3
610
40
19
16
23
1.91
4771--5835
154
7.0
154
89
4
1612
41
19
19
20
1.91
4811--5835
446
2.3
454
89
5
1581
41
19
19
20
1.91
7610--8326
154
4.7
154
93
0
1182
40
18
19
21
1.91
8893--8986
45
2.2
42
86
7
127
36
4
20
39
1.72
9220--9336
60
1.9
61
96
1
218
44
12
8
34
1.73

Tables:   1

The End!