Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019309.1 Corchorus olitorius cultivar O-4 contig19342, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30876

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7516--7576
21
2.9
21
90
0
86
31
19
16
32
1.94
14148--14217
20
3.5
20
68
3
61
38
24
12
24
1.90
17202--17243
21
2.0
21
85
0
57
28
21
16
33
1.95
17359--17492
21
6.4
21
95
1
209
25
23
20
29
1.99
20586--20695
39
2.8
39
81
0
130
51
14
10
22
1.73
20660--21294
30
21.1
30
81
6
730
46
16
14
22
1.83
21205--21369
38
4.6
36
71
14
128
45
20
16
18
1.86
21165--21328
68
2.4
68
87
0
229
46
17
16
20
1.84
26187--26229
22
2.0
22
81
9
52
16
9
11
62
1.53
28570--28621
26
2.0
26
84
0
68
21
11
5
61
1.50

Tables:   1

The End!